Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0528
(570 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|c... 29 0.36
SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase Ppk30|Schizos... 27 2.6
SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3 |Schizos... 26 3.4
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos... 26 3.4
SPBPB2B2.18 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual 26 4.5
SPCC1393.14 |||nuclear telomere cap complex subunit Ten1|Schizos... 25 5.9
SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit Alp4|... 25 5.9
SPBC23G7.11 |||DNA-3-methyladenine glycosidase Mag2 |Schizosacch... 25 7.8
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 25 7.8
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po... 25 7.8
>SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 329
Score = 29.5 bits (63), Expect = 0.36
Identities = 15/47 (31%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Frame = -3
Query: 301 RLCER--DYRCQRIHQPMVCCYCCTN*HNCQ*NSPSHCSWLETCYHF 167
R CE+ +Y+C R H C C + C HC W + C F
Sbjct: 97 RFCEKCQEYKCDRSHH---CSQC----NKCILRMDHHCMWFKNCVGF 136
>SPBC6B1.02 |ppk30||Ark1/Prk1 family protein kinase
Ppk30|Schizosaccharomyces pombe|chr 2|||Manual
Length = 953
Score = 26.6 bits (56), Expect = 2.6
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +2
Query: 182 LQPATMRWRILLTIVSVCTAIAAYHWLMDPL 274
LQ IL + VC A+AA H+L PL
Sbjct: 153 LQHRLTEGEILKILADVCDAVAAMHYLDPPL 183
>SPBC21D10.05c |ucp3|soc2|GTPase activating protein Ucp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 601
Score = 26.2 bits (55), Expect = 3.4
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +1
Query: 178 MSPTSYNEMENSTDNCVSLYSNSSIPLVDGSS 273
MS S NE + N S Y N+S+P +D ++
Sbjct: 417 MSKLSLNEQPAAPSNSNSQYMNTSMPTLDSTN 448
>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 732
Score = 26.2 bits (55), Expect = 3.4
Identities = 15/47 (31%), Positives = 23/47 (48%)
Frame = +1
Query: 181 SPTSYNEMENSTDNCVSLYSNSSIPLVDGSSDTCSLAHTVFVESSLF 321
S +S ++ T + +S S S P DGS D+ +AH + S F
Sbjct: 241 SHSSIGDLTTITQSSISSGSGSFKPSWDGSFDSSLMAHQSYGTSPAF 287
>SPBPB2B2.18 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
Length = 175
Score = 25.8 bits (54), Expect = 4.5
Identities = 14/44 (31%), Positives = 19/44 (43%)
Frame = +2
Query: 152 ERRLTEVIACLQPATMRWRILLTIVSVCTAIAAYHWLMDPLTPV 283
+RRL I W LL +V VC + L+ P+ PV
Sbjct: 10 QRRLVREINKFSSFESNWLFLLFLVRVCRQLKTVTVLIVPVLPV 53
>SPCC1393.14 |||nuclear telomere cap complex subunit
Ten1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 102
Score = 25.4 bits (53), Expect = 5.9
Identities = 11/23 (47%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Frame = +1
Query: 223 CVSLYSNSSIPLVDGSSD-TCSL 288
CV Y N + L+DGSS TC +
Sbjct: 26 CVQSYKNGILRLIDGSSSVTCDV 48
>SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit
Alp4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 784
Score = 25.4 bits (53), Expect = 5.9
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = -3
Query: 172 HFS*TTLKSFQIITSSLFERHYLILKDKFVNVE 74
+FS TL+ + + TS + YLIL+D +++E
Sbjct: 180 NFSLQTLRLYTLPTSRSLRQVYLILRDLLLSME 212
>SPBC23G7.11 |||DNA-3-methyladenine glycosidase Mag2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 213
Score = 25.0 bits (52), Expect = 7.8
Identities = 10/29 (34%), Positives = 15/29 (51%)
Frame = +2
Query: 362 GVHRKVVAPSIITARTRSILNDFNMSCDD 448
G+ R + + + A T SI+N F C D
Sbjct: 44 GIIRAITSQKLSDAATNSIINKFCTQCSD 72
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 25.0 bits (52), Expect = 7.8
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +1
Query: 175 SMSPTSYNEMENSTDNCVSLYSNSSIPLVDGSSDTCSLAHTVFVESSL 318
S S TS + + +S+ N + S +S L S+ + SLA + SSL
Sbjct: 82 SSSLTSSSSLASSSTNSTTSASPTSSSLTSSSATSSSLASSSTTSSSL 129
>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1564
Score = 25.0 bits (52), Expect = 7.8
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = +1
Query: 190 SYNEMENSTDNCVSLYSNSSIPLVDG 267
SY S DNC+ L+S S LVDG
Sbjct: 1387 SYINDSFSVDNCLRLFSWSHSLLVDG 1412
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,081,508
Number of Sequences: 5004
Number of extensions: 39851
Number of successful extensions: 116
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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