Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0528
         (570 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0167 + 5221910-5222516,5222826-5224642                           28   6.0  
06_01_0220 - 1673657-1675765                                           28   6.0  
07_03_0170 + 14679746-14679936,14680111-14680208,14680460-146806...    27   8.0  

>09_02_0167 + 5221910-5222516,5222826-5224642
          Length = 807

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 29/112 (25%), Positives = 51/112 (45%), Gaps = 6/112 (5%)
 Frame = -1

Query: 474 LGFRISLPVSSQDMLKSLSMERVRAVMMLGATTFLCTPIMNSKTNNVEVTAKKG*FHKDC 295
           LG ++   + SQ   KSL  E   +VM L A+ F    +M +  N+V + + +   ++  
Sbjct: 17  LGGQVLNEIRSQFGKKSLIFEVENSVMEL-ASEFR---VMQAFINHVGMCSHQNAAYEAW 72

Query: 294 VSETTGV---RGSINQWYAAIAVQTDT---IVSRILHLIVAGWRHAITSVKR 157
           + E   V      I + YA +  QT     ++  +LH  +  W H  T +K+
Sbjct: 73  LDEVKSVGFDAEDIIEEYAYLIAQTSNEGGLIKSVLHRSINAWCHIATQLKQ 124


>06_01_0220 - 1673657-1675765
          Length = 702

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +1

Query: 139 FESF*ASFN*SDSMSPTSYNEMENSTDNCVSLYSNSSIPLVDGSSDTCSL 288
           FE+F AS      + P +   ++  TD+C + Y N     V G  DTC+L
Sbjct: 404 FEAFSASA--PGRIDPATGYLLDELTDDCHADYRNLMAAAVRGDFDTCAL 451


>07_03_0170 +
           14679746-14679936,14680111-14680208,14680460-14680605,
           14680933-14680977
          Length = 159

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = +2

Query: 308 NHPFFAVTSTLLVLLFMIGV 367
           NHP  A T+T+L+LL ++GV
Sbjct: 2   NHPSSAATATVLLLLALLGV 21


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,476,430
Number of Sequences: 37544
Number of extensions: 226181
Number of successful extensions: 564
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 564
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)