Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0528
         (570 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC036683-1|AAH36683.1|  142|Homo sapiens transmembrane protein 1...   175   1e-43
AK095420-1|BAC04545.1|  125|Homo sapiens protein ( Homo sapiens ...   174   2e-43
BC022550-1|AAH22550.1|   47|Homo sapiens C16orf69 protein protein.     52   1e-06

>BC036683-1|AAH36683.1|  142|Homo sapiens transmembrane protein 188
           protein.
          Length = 142

 Score =  175 bits (425), Expect = 1e-43
 Identities = 78/116 (67%), Positives = 93/116 (80%)
 Frame = +2

Query: 131 CDDLKAFERRLTEVIACLQPATMRWRILLTIVSVCTAIAAYHWLMDPLTPVVSLTQSLWN 310
           C DLKAFERRLTE I CLQPAT RWR+LL +VSVCTA  A++WL+DP T  VS   SLWN
Sbjct: 24  CQDLKAFERRLTEYIHCLQPATGRWRMLLIVVSVCTATGAWNWLIDPETQKVSFFTSLWN 83

Query: 311 HPFFAVTSTLLVLLFMIGVHRKVVAPSIITARTRSILNDFNMSCDDTGKLILKPRP 478
           HPFF ++   L+ LF  G+H++VVAPSII AR R++L ++NMSCDDTGKLILKPRP
Sbjct: 84  HPFFTISCITLIGLFFAGIHKRVVAPSIIAARCRTVLAEYNMSCDDTGKLILKPRP 139


>AK095420-1|BAC04545.1|  125|Homo sapiens protein ( Homo sapiens
           cDNA FLJ38101 fis, clone D3OST1000270. ).
          Length = 125

 Score =  174 bits (423), Expect = 2e-43
 Identities = 81/122 (66%), Positives = 97/122 (79%)
 Frame = +2

Query: 113 SLEQTACDDLKAFERRLTEVIACLQPATMRWRILLTIVSVCTAIAAYHWLMDPLTPVVSL 292
           SLEQ   +DLKAFERRLTE I CLQPAT RWR+LL +VSVCTA  A++WL+DP T  VS 
Sbjct: 3   SLEQA--EDLKAFERRLTEYIHCLQPATGRWRMLLIVVSVCTATGAWNWLIDPETQKVSF 60

Query: 293 TQSLWNHPFFAVTSTLLVLLFMIGVHRKVVAPSIITARTRSILNDFNMSCDDTGKLILKP 472
             SLWNHPFF ++   L+ LF  G+H++VVAPSII AR R++L ++NMSCDDTGKLILKP
Sbjct: 61  FTSLWNHPFFTISCITLIGLFFAGIHKRVVAPSIIAARCRTVLAEYNMSCDDTGKLILKP 120

Query: 473 RP 478
           RP
Sbjct: 121 RP 122


>BC022550-1|AAH22550.1|   47|Homo sapiens C16orf69 protein protein.
          Length = 47

 Score = 52.0 bits (119), Expect = 1e-06
 Identities = 28/39 (71%), Positives = 31/39 (79%), Gaps = 1/39 (2%)
 Frame = +2

Query: 113 SLEQTACDDLKAFERRLTEVIACLQPATMRWR-ILLTIV 226
           SLEQ   +DLKAFERRLTE I CLQPAT RWR +LL I+
Sbjct: 3   SLEQA--EDLKAFERRLTEYIHCLQPATGRWRSVLLHII 39


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,106,485
Number of Sequences: 237096
Number of extensions: 1355136
Number of successful extensions: 6728
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6728
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5816287018
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)