Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0528
         (570 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014296-1832|AAF50148.1|  127|Drosophila melanogaster CG8009-PA...   178   4e-45
AY069435-1|AAL39580.1|  131|Drosophila melanogaster LD14173p pro...   172   2e-43
AE014296-1831|AAN11906.1|  131|Drosophila melanogaster CG8009-PB...   172   2e-43
AE014298-3223|EAL24566.1|  123|Drosophila melanogaster CG41106-P...    78   1e-14

>AE014296-1832|AAF50148.1|  127|Drosophila melanogaster CG8009-PA,
           isoform A protein.
          Length = 127

 Score =  178 bits (434), Expect = 4e-45
 Identities = 77/125 (61%), Positives = 104/125 (83%)
 Frame = +2

Query: 116 LEQTACDDLKAFERRLTEVIACLQPATMRWRILLTIVSVCTAIAAYHWLMDPLTPVVSLT 295
           +E +AC+DLKAFERRLTEV++  +P+T RWRI+L+ +S+CTAI+A++WL DP T VV LT
Sbjct: 1   MEPSACEDLKAFERRLTEVVSSYRPSTFRWRIVLSAMSMCTAISAWYWLRDPRTTVVPLT 60

Query: 296 QSLWNHPFFAVTSTLLVLLFMIGVHRKVVAPSIITARTRSILNDFNMSCDDTGKLILKPR 475
           +SLW HP F V +  LV+LF++G+ + V+AP IIT+RTR +L DFNMSCDDTGKLILKPR
Sbjct: 61  ESLWIHPVFTVATLTLVVLFILGIQKLVIAPQIITSRTRMVLGDFNMSCDDTGKLILKPR 120

Query: 476 PANSS 490
            +N++
Sbjct: 121 QSNNN 125


>AY069435-1|AAL39580.1|  131|Drosophila melanogaster LD14173p
           protein.
          Length = 131

 Score =  172 bits (419), Expect = 2e-43
 Identities = 78/129 (60%), Positives = 103/129 (79%), Gaps = 4/129 (3%)
 Frame = +2

Query: 116 LEQTACDDLKAFERRLTEVIACLQPATMRWRILLTIV----SVCTAIAAYHWLMDPLTPV 283
           +E +AC+DLKAFERRLTEV++  +P+T RWR LL +V    S+CTAI+A++WL DP T V
Sbjct: 1   MEPSACEDLKAFERRLTEVVSSYRPSTFRWRKLLAVVLSAMSMCTAISAWYWLRDPRTTV 60

Query: 284 VSLTQSLWNHPFFAVTSTLLVLLFMIGVHRKVVAPSIITARTRSILNDFNMSCDDTGKLI 463
           V LT+SLW HP F V +  LV+LF++G+ + V+AP IIT+RTR +L DFNMSCDDTGKLI
Sbjct: 61  VPLTESLWIHPVFTVATLTLVVLFILGIQKLVIAPQIITSRTRMVLGDFNMSCDDTGKLI 120

Query: 464 LKPRPANSS 490
           LKPR +N++
Sbjct: 121 LKPRQSNNN 129


>AE014296-1831|AAN11906.1|  131|Drosophila melanogaster CG8009-PB,
           isoform B protein.
          Length = 131

 Score =  172 bits (419), Expect = 2e-43
 Identities = 78/129 (60%), Positives = 103/129 (79%), Gaps = 4/129 (3%)
 Frame = +2

Query: 116 LEQTACDDLKAFERRLTEVIACLQPATMRWRILLTIV----SVCTAIAAYHWLMDPLTPV 283
           +E +AC+DLKAFERRLTEV++  +P+T RWR LL +V    S+CTAI+A++WL DP T V
Sbjct: 1   MEPSACEDLKAFERRLTEVVSSYRPSTFRWRKLLAVVLSAMSMCTAISAWYWLRDPRTTV 60

Query: 284 VSLTQSLWNHPFFAVTSTLLVLLFMIGVHRKVVAPSIITARTRSILNDFNMSCDDTGKLI 463
           V LT+SLW HP F V +  LV+LF++G+ + V+AP IIT+RTR +L DFNMSCDDTGKLI
Sbjct: 61  VPLTESLWIHPVFTVATLTLVVLFILGIQKLVIAPQIITSRTRMVLGDFNMSCDDTGKLI 120

Query: 464 LKPRPANSS 490
           LKPR +N++
Sbjct: 121 LKPRQSNNN 129


>AE014298-3223|EAL24566.1|  123|Drosophila melanogaster CG41106-PA
           protein.
          Length = 123

 Score = 77.8 bits (183), Expect = 1e-14
 Identities = 41/120 (34%), Positives = 65/120 (54%)
 Frame = +2

Query: 116 LEQTACDDLKAFERRLTEVIACLQPATMRWRILLTIVSVCTAIAAYHWLMDPLTPVVSLT 295
           +E T  +DL AFERRL EV+   + +++RWR +L  +  C+AI+A HW+ D       + 
Sbjct: 1   MEDTDQEDLLAFERRLAEVVNTEKRSSLRWRFVLGAIFACSAISACHWVRDAKESESVVF 60

Query: 296 QSLWNHPFFAVTSTLLVLLFMIGVHRKVVAPSIITARTRSILNDFNMSCDDTGKLILKPR 475
           Q L +   FA +   + LL   G +        I   T+ +L+ F ++ D+ G+LIL PR
Sbjct: 61  QILSSQSAFAFSLATICLLIFYGFNHATKQDPSILRDTQEMLSPFRLNIDNQGRLILLPR 120


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,568,364
Number of Sequences: 53049
Number of extensions: 409851
Number of successful extensions: 968
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 966
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2234671092
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)