Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0528
         (570 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL021571-5|CAA16513.2|  140|Caenorhabditis elegans Hypothetical ...    96   1e-20
AL021571-6|CAN99719.1|  142|Caenorhabditis elegans Hypothetical ...    96   2e-20
Z81042-1|CAB02795.1| 1657|Caenorhabditis elegans Hypothetical pr...    27   7.2  
Z78542-3|CAB01745.2|  463|Caenorhabditis elegans Hypothetical pr...    27   7.2  
Z68493-8|CAA92795.1|  336|Caenorhabditis elegans Hypothetical pr...    27   7.2  
U64853-4|AAB04977.1|  286|Caenorhabditis elegans Egg laying defe...    27   9.5  
AF283983-1|AAG13398.1|  286|Caenorhabditis elegans C2H2 zinc fin...    27   9.5  

>AL021571-5|CAA16513.2|  140|Caenorhabditis elegans Hypothetical
           protein T19A6.3a protein.
          Length = 140

 Score = 96.3 bits (229), Expect = 1e-20
 Identities = 50/126 (39%), Positives = 74/126 (58%), Gaps = 4/126 (3%)
 Frame = +2

Query: 125 TACDDLKAFERRLTEVIACLQPATMRWRILLTIVSVCTAIAAYHWLMDP---LTPVVSLT 295
           TAC+DLK FE+RLTEVI  + P   RWRI + I +V   +    +  +    +  +  + 
Sbjct: 14  TACEDLKFFEKRLTEVITYMGPTCTRWRIAIVIFAVLVGVIGSKYFANEKIEIFQIPMID 73

Query: 296 QSLWNHPFFAVTSTLLVLLFMI-GVHRKVVAPSIITARTRSILNDFNMSCDDTGKLILKP 472
             L  H  F +   + +LLF + GVHR++VAP+I+  R R  L+ F++SCD  GKLI+KP
Sbjct: 74  MFLTTHLDFTLCFFVGLLLFAVFGVHRRIVAPTIVARRCRDALSPFSLSCDHNGKLIVKP 133

Query: 473 RPANSS 490
              NS+
Sbjct: 134 AVRNSA 139


>AL021571-6|CAN99719.1|  142|Caenorhabditis elegans Hypothetical
           protein T19A6.3b protein.
          Length = 142

 Score = 95.9 bits (228), Expect = 2e-20
 Identities = 51/128 (39%), Positives = 74/128 (57%), Gaps = 6/128 (4%)
 Frame = +2

Query: 125 TACDDLKAFERRLTEVIACLQPATMRWRILLTIVSVCTAIAAYHWLMDPLTPVV-----S 289
           TAC+DLK FE+RLTEVI  + P   RWRI + I +V   +    +  + L  +       
Sbjct: 14  TACEDLKFFEKRLTEVITYMGPTCTRWRIAIVIFAVLVGVIGSKYFANELQKIEIFQIPM 73

Query: 290 LTQSLWNHPFFAVTSTLLVLLFMI-GVHRKVVAPSIITARTRSILNDFNMSCDDTGKLIL 466
           +   L  H  F +   + +LLF + GVHR++VAP+I+  R R  L+ F++SCD  GKLI+
Sbjct: 74  IDMFLTTHLDFTLCFFVGLLLFAVFGVHRRIVAPTIVARRCRDALSPFSLSCDHNGKLIV 133

Query: 467 KPRPANSS 490
           KP   NS+
Sbjct: 134 KPAVRNSA 141


>Z81042-1|CAB02795.1| 1657|Caenorhabditis elegans Hypothetical
           protein C27H6.1 protein.
          Length = 1657

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -3

Query: 418 YGASARCDDARSHYLSMYSNHE*QNQ*CRGHSKKGMIPQ 302
           YGA A  D+++ +  S Y  +E     CR + ++   PQ
Sbjct: 491 YGAEAAADNSQEYDYSAYGGYEGYLAACRAYDEESQQPQ 529


>Z78542-3|CAB01745.2|  463|Caenorhabditis elegans Hypothetical
           protein F20D1.3 protein.
          Length = 463

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -3

Query: 397 DDARSHYLSMYSNHE*QNQ*CRGHSKKGM-IPQRLCERD 284
           D+ R H L++ S     +Q C G  ++GM IP++ C  D
Sbjct: 221 DNTRVHLLNLNSPQHITSQNCSGDPQRGMPIPRKQCGFD 259


>Z68493-8|CAA92795.1|  336|Caenorhabditis elegans Hypothetical
           protein C33A12.11 protein.
          Length = 336

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = +2

Query: 221 IVSVCTAIAAYHWLMDPLTPVVSLTQSLWNHPFFAVTSTLLVLLF 355
           I S C +IA  HWL   L   +  T      PF      +L++LF
Sbjct: 99  ISSFCASIAPNHWLKLILFLALYFTYLAMAFPFLVPVVPILIVLF 143


>U64853-4|AAB04977.1|  286|Caenorhabditis elegans Egg laying
           defective protein 46 protein.
          Length = 286

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -2

Query: 314 DDSTKTV*ARLQVSEDPSTNGMLLLLYKLTQLSVEFSISL 195
           D ST+TV   L +  +P+    +L LY++ Q  ++FS  L
Sbjct: 41  DCSTQTVFPTLPMFWNPTLVQQMLALYQIQQQQIQFSAKL 80


>AF283983-1|AAG13398.1|  286|Caenorhabditis elegans C2H2 zinc finger
           protein EGL-46 protein.
          Length = 286

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -2

Query: 314 DDSTKTV*ARLQVSEDPSTNGMLLLLYKLTQLSVEFSISL 195
           D ST+TV   L +  +P+    +L LY++ Q  ++FS  L
Sbjct: 41  DCSTQTVFPTLPMFWNPTLVQQMLALYQIQQQQIQFSAKL 80


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,442,505
Number of Sequences: 27780
Number of extensions: 222186
Number of successful extensions: 628
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 626
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)