Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0528
         (570 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    25   0.53 
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   1.6  
AB073997-1|BAC76401.1|  124|Apis mellifera preprotachykinin prot...    23   2.8  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   6.5  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   6.5  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   8.6  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 25.0 bits (52), Expect = 0.53
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = +1

Query: 169 SDSMSPTSY-NEMENSTDNCVSLYSNSSIPLVDGSSDTCSLAHTVFVESSLFCCDLYIIG 345
           +D   P S  N  EN+T +  + Y+N     V+   DT  LA TVF   ++    + +IG
Sbjct: 155 NDKPIPASCCNSPENNTCSISNSYTNGC---VEALKDTVKLAGTVFGSVAIAIAIVELIG 211


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -3

Query: 439 RHVEVIKYGASARCDDARSHYLSMYSN 359
           RH+EVIK      CD   +++  M  N
Sbjct: 209 RHMEVIKIKNFDNCDQRINYHFGMTDN 235


>AB073997-1|BAC76401.1|  124|Apis mellifera preprotachykinin
           protein.
          Length = 124

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +1

Query: 172 DSMSPTSYNEMENSTDNCVSLYSNS 246
           D  +PT + EM+    N  SL S +
Sbjct: 27  DKRAPTGHQEMQGKEKNSASLNSEN 51


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 5/7 (71%), Positives = 6/7 (85%)
 Frame = -3

Query: 250 CCYCCTN 230
           CC+CC N
Sbjct: 12  CCWCCDN 18


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +1

Query: 10  SLIAPFYGI*LHDKKTLICDNFQH*QICLL 99
           S++ PF+ +   D   L+  NF    ICL+
Sbjct: 376 SILVPFFYVQEDDDVKLVLLNFGWQMICLI 405


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = +1

Query: 142 ESF*ASFN*SDSMSPTSYNEMENSTDNCVSLYSNSSIPLVDGSSDTCSL 288
           ES+ AS + SDS+S T    ++ S+ +  S  + SS  +   +S  C +
Sbjct: 41  ESYDASSSNSDSLSMTIPPSIDRSSIHEESYLAESSRSIDPCASKYCGI 89


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 135,823
Number of Sequences: 438
Number of extensions: 2532
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16381902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)