Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0528
         (570 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g60250.1 68414.m06785 zinc finger (B-box type) family protein...    32   0.31 
At5g35210.2 68418.m04175 peptidase M50 family protein / sterol-r...    30   0.95 
At5g35210.1 68418.m04174 peptidase M50 family protein / sterol-r...    30   0.95 
At5g13320.1 68418.m01531 auxin-responsive GH3 family protein sim...    27   6.7  
At3g56690.1 68416.m06306 calmodulin-binding protein identical to...    27   6.7  
At2g02620.1 68415.m00201 DC1 domain-containing protein / PHD fin...    27   6.7  
At5g26340.1 68418.m03148 hexose transporter, putative strong sim...    27   8.8  

>At1g60250.1 68414.m06785 zinc finger (B-box type) family protein
           contains similarity to zinc finger protein GI:3618320
           from [Oryza sativa]
          Length = 251

 Score = 31.9 bits (69), Expect = 0.31
 Identities = 17/62 (27%), Positives = 27/62 (43%)
 Frame = -3

Query: 382 HYLSMYSNHE*QNQ*CRGHSKKGMIPQRLCERDYRCQRIHQPMVCCYCCTN*HNCQ*NSP 203
           H +   +N+  Q Q   GH ++  + +R C  D  C+R    M C  C  +  N     P
Sbjct: 103 HVVHHNNNNNHQQQHVGGHQRRAEMFERSCHGDNNCERWMFAMRCELCVASNSNAVVYCP 162

Query: 202 SH 197
           +H
Sbjct: 163 TH 164


>At5g35210.2 68418.m04175 peptidase M50 family protein /
           sterol-regulatory element binding protein (SREBP) site 2
           protease family protein contains PFam PF02163:
           sterol-regulatory element binding protein (SREBP) site 2
           protease
          Length = 1409

 Score = 30.3 bits (65), Expect = 0.95
 Identities = 15/51 (29%), Positives = 27/51 (52%)
 Frame = +1

Query: 178 MSPTSYNEMENSTDNCVSLYSNSSIPLVDGSSDTCSLAHTVFVESSLFCCD 330
           ++ +S NE ++    C +  SN     +DG+SD C +     ++ +L CCD
Sbjct: 380 VTDSSTNESKDLDSRCTNGGSNEVSSDLDGNSDECRICG---MDGTLLCCD 427


>At5g35210.1 68418.m04174 peptidase M50 family protein /
           sterol-regulatory element binding protein (SREBP) site 2
           protease family protein contains PFam PF02163:
           sterol-regulatory element binding protein (SREBP) site 2
           protease
          Length = 1576

 Score = 30.3 bits (65), Expect = 0.95
 Identities = 15/51 (29%), Positives = 27/51 (52%)
 Frame = +1

Query: 178 MSPTSYNEMENSTDNCVSLYSNSSIPLVDGSSDTCSLAHTVFVESSLFCCD 330
           ++ +S NE ++    C +  SN     +DG+SD C +     ++ +L CCD
Sbjct: 380 VTDSSTNESKDLDSRCTNGGSNEVSSDLDGNSDECRICG---MDGTLLCCD 427


>At5g13320.1 68418.m01531 auxin-responsive GH3 family protein
           similar to auxin-responsive GH3 product [Glycine max]
           GI:18591; contains Pfam profile PF03321: GH3
           auxin-responsive promoter
          Length = 575

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 457 FASIVTRHVEVIKYGASARCDDARSHYLS 371
           FAS++ R +EV+K      C + RS +LS
Sbjct: 218 FASVMVRAIEVLKNSWEELCSNIRSGHLS 246


>At3g56690.1 68416.m06306 calmodulin-binding protein identical to
           calmodulin-binding protein GI:6760428 from [Arabidopsis
           thaliana]
          Length = 1022

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = -1

Query: 243 IAVQTDTIVSRILHLIVAGWRHAITSVK 160
           I V + T  S ILH+I+ G RH++++++
Sbjct: 549 IGVPSSTQRSDILHIILRGMRHSLSNIQ 576


>At2g02620.1 68415.m00201 DC1 domain-containing protein / PHD finger
           protein-related contains Pfam profiles PF03107: DC1
           domain, weak hit to PF00628: PHD-finger
          Length = 513

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 18/55 (32%), Positives = 20/55 (36%), Gaps = 1/55 (1%)
 Frame = -3

Query: 379 YLSMYSNHE*QNQ*CRGHSKKGMIPQRLCERDYRCQRIHQPMVCCYCCTN*H-NC 218
           Y+  Y + E     CRG    G     LCE             C YCCT  H NC
Sbjct: 396 YMVRYKHDEHYLTFCRGDEAGGSDWCELCEGKLAIGGKEGFYKCTYCCTTLHINC 450


>At5g26340.1 68418.m03148 hexose transporter, putative strong
           similarity to hexose transporter, Lycopersicon
           esculentum, GI:5734440; contains Pfam profile PF00083:
           major facilitator superfamily protein
          Length = 526

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 212 LLTIVSVCTAIAAYHWLMDPL 274
           +L +V +CT +AA+ W   PL
Sbjct: 387 ILVVVMICTYVAAFAWSWGPL 407


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,498,015
Number of Sequences: 28952
Number of extensions: 197039
Number of successful extensions: 550
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 542
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 550
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1102220672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)