Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0527
(699 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0521 - 22904656-22904962,22905132-22905340,22905432-229055... 84 9e-17
03_01_0265 + 2046918-2049102,2052385-2052452,2052542-2052652,205... 56 3e-08
05_06_0213 + 26414613-26414695,26416907-26417077,26417983-264182... 47 2e-05
01_06_0491 - 29763738-29764044,29764266-29764474,29764565-297646... 41 0.001
03_02_0058 - 5316112-5316418,5316497-5316705,5316773-5316859,531... 38 0.008
12_02_1123 - 26250300-26250362,26251988-26252042,26252128-262522... 30 1.5
01_06_1545 + 38144624-38145301 29 3.5
06_03_0399 - 20403488-20405092 29 4.7
09_02_0022 + 3065644-3065953,3066048-3067162,3067261-3067437,306... 28 8.2
05_03_0373 - 13194723-13195847,13196219-13196809 28 8.2
>01_05_0521 -
22904656-22904962,22905132-22905340,22905432-22905521,
22905624-22905734,22906401-22906468,22906611-22906653
Length = 275
Score = 84.2 bits (199), Expect = 9e-17
Identities = 63/199 (31%), Positives = 100/199 (50%), Gaps = 2/199 (1%)
Frame = +1
Query: 79 MAPPYYADLGKKANDVFSKGYHFGVFKLDLKTKSESGVEFTSGITSNQESGKVFGSLSSK 258
MAP Y D+GKK D+ + Y K L T + GV T+ T ES VFG L ++
Sbjct: 1 MAPGLYTDIGKKTRDLLYRDYGTH-HKFTLTTCTPEGVTITAAGTRKNES--VFGELQTQ 57
Query: 259 FAVKDYGLTFTEKWNTDNTLATDITIQDKIAAGLKVTLEGTFAPQTGTKTGKLKTSFTND 438
+K+ LT K N+++ L T +T+ + GLK L Q ++GKL+ + ++
Sbjct: 58 --LKNKKLTVDVKANSESDLLTTVTVDEFGTPGLKSILSLVVPDQ---RSGKLELQYLHE 112
Query: 439 TVAVNTNLDLDLAGPVVDVAAVLNYQGWLAGVHTQFDTQKAKFSKNNFALSYQSGDF--A 612
+N ++ L+ + P+V+++ V + GV FDT + F+K N ALS + D +
Sbjct: 113 YAGINASVGLN-SNPMVNLSGVFGSKELSVGVDVAFDTATSNFTKYNAALSLTNSDLIAS 171
Query: 613 LHTNVDNGKDFGGSIYQKV 669
LH N ++G S Y V
Sbjct: 172 LHLN-NHGDTLIASYYHLV 189
>03_01_0265 + 2046918-2049102,2052385-2052452,2052542-2052652,
2053164-2053250,2053476-2053684,2054115-2054340,
2054473-2054510,2054657-2054714,2055363-2055662,
2055832-2055903,2055988-2056112,2056240-2056312,
2056417-2056521
Length = 1218
Score = 56.0 bits (129), Expect = 3e-08
Identities = 44/164 (26%), Positives = 78/164 (47%)
Frame = +1
Query: 121 DVFSKGYHFGVFKLDLKTKSESGVEFTSGITSNQESGKVFGSLSSKFAVKDYGLTFTEKW 300
D+ K Y+F K L T S SG+ T+ T + G + ++ K T K
Sbjct: 729 DLLYKDYNFDQ-KFSLTTTSNSGLGLTA--TGVKIDELFIGDIQTQH--KSGKTTVDVKI 783
Query: 301 NTDNTLATDITIQDKIAAGLKVTLEGTFAPQTGTKTGKLKTSFTNDTVAVNTNLDLDLAG 480
++++ ++T +T+ D+ GLK + Q K+GKL + +D A+N+ + L +
Sbjct: 784 DSESRVSTTVTV-DEALTGLKTSFSFRVPDQ---KSGKLDLQYLHDHFALNSTIGLT-ST 838
Query: 481 PVVDVAAVLNYQGWLAGVHTQFDTQKAKFSKNNFALSYQSGDFA 612
P++++AA + AG FD+ A +K N + Y DF+
Sbjct: 839 PLIELAATIGTNELSAGAEVGFDSTSASVTKYNSGICYNKHDFS 882
>05_06_0213 +
26414613-26414695,26416907-26417077,26417983-26418219,
26418543-26418572,26419248-26419282,26421680-26421747,
26423067-26423126,26423310-26423399,26423487-26423695,
26424083-26424383
Length = 427
Score = 46.8 bits (106), Expect = 2e-05
Identities = 36/129 (27%), Positives = 53/129 (41%), Gaps = 1/129 (0%)
Frame = +1
Query: 316 LATDITIQDKIAAGLKVTLEGTFAPQTGTKTGKLKTSFTNDTVAVNTNLDLDLAGPVVDV 495
L T T+ D GLK L F Q K+ K + + + +N + L+ A P+V
Sbjct: 229 LITTFTVHDLGTPGLKGILSIPFPYQ---KSAKAEVQYLHPHAGLNAIVGLN-ANPLVSF 284
Query: 496 AAVLNYQGWLAGVHTQFDTQKAKFSKNNFALSYQSGDFALHTNVDN-GKDFGGSIYQKVS 672
+ V + G FDT F+K N LS+ + D ++N G S Y KVS
Sbjct: 285 SGVFGTGAFAVGTDVAFDTATGDFTKYNAGLSHTTPDLTAALLLNNKGDSLAASYYHKVS 344
Query: 673 DKLDCGVSM 699
G +
Sbjct: 345 KTSAVGAEL 353
>01_06_0491 -
29763738-29764044,29764266-29764474,29764565-29764654,
29764819-29764905,29765598-29765733,29766036-29766186,
29766334-29766502
Length = 382
Score = 40.7 bits (91), Expect = 0.001
Identities = 30/118 (25%), Positives = 52/118 (44%), Gaps = 1/118 (0%)
Frame = +1
Query: 322 TDITIQDKIAAGLKVTLEGTFAPQTGTKTGKLKTSFTNDTVAVNTNLDLDLAGPVVDVAA 501
T IT +D +GLK + F QT GK + + +D ++ + L + P+V+++
Sbjct: 184 TTITTEDLGVSGLKQIVSLPFPYQTA---GKAELQYLHDYAGISLGVGLT-SKPLVNLSG 239
Query: 502 VLNYQGWLAGVHTQFDTQKAKFSKNNFALSYQSGDFALHTNVDN-GKDFGGSIYQKVS 672
V + G DT F+K + L+ + D A ++N G S Y V+
Sbjct: 240 VFGNKSVAVGADVAVDTSTGDFTKYDAGLTINNSDLAADLTLNNKGDSLTASYYHLVN 297
>03_02_0058 -
5316112-5316418,5316497-5316705,5316773-5316859,
5316945-5317055,5317536-5317643,5319082-5319149,
5319269-5319320
Length = 313
Score = 37.9 bits (84), Expect = 0.008
Identities = 36/161 (22%), Positives = 70/161 (43%), Gaps = 1/161 (0%)
Frame = +1
Query: 130 SKGYHFGVFKLDLKTKSESGVEFTSGITSNQESGKVFGSLSSKFAVKDYGLTFTE-KWNT 306
S ++F V K + G + T+ ++ G +SS + K T + K +T
Sbjct: 54 SSSFYFQVIKAVKNISMQIGGDRGLTSTAVKKGGLYTLDVSSVYKYKS---TLVDVKVDT 110
Query: 307 DNTLATDITIQDKIAAGLKVTLEGTFAPQTGTKTGKLKTSFTNDTVAVNTNLDLDLAGPV 486
++ ++T +T+ D + + VT P + GK++ + ++ + T + + PV
Sbjct: 111 ESNISTTLTVFDVLPSTKLVT--SVKLPDYNS--GKVEMQYFHENASFATAVGMK-PSPV 165
Query: 487 VDVAAVLNYQGWLAGVHTQFDTQKAKFSKNNFALSYQSGDF 609
V+ + QG G FDT KF+K + A+ D+
Sbjct: 166 VEFSGTAGAQGLAFGAEAGFDTATGKFTKYSAAIGVTKPDY 206
>12_02_1123 -
26250300-26250362,26251988-26252042,26252128-26252224,
26252364-26253048,26253354-26253721,26253931-26254074,
26254925-26255276
Length = 587
Score = 30.3 bits (65), Expect = 1.5
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 2/78 (2%)
Frame = +1
Query: 88 PYYADLGKKANDVFSKGYHFGVFKLDLKTKS--ESGVEFTSGITSNQESGKVFGSLSSKF 261
P Y G + D+ SK +H LDL S + G++F SG+ S + V L+ +
Sbjct: 261 PQYVH-GTQLPDLESKFFH-----LDLMHPSVYKVGLQFLSGVISGGNACCVAMLLAFRE 314
Query: 262 AVKDYGLTFTEKWNTDNT 315
A+KDY T+ N D T
Sbjct: 315 AIKDYSTPSTKTLNRDLT 332
>01_06_1545 + 38144624-38145301
Length = 225
Score = 29.1 bits (62), Expect = 3.5
Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 8/65 (12%)
Frame = -2
Query: 521 QPW*FSTAATSTTGPAKSRSKL---VFTATVSLV---NEVFNFP--VLVPVCGAKVPSRV 366
QP +TAA+S++ P SRSK+ + TVS E N V+VP A P+RV
Sbjct: 29 QPQLAATAASSSSSPFSSRSKIGKDIIDKTVSFTLYQQETMNRTGYVVVPGVDAPAPARV 88
Query: 365 TLRPA 351
+ A
Sbjct: 89 VVSDA 93
>06_03_0399 - 20403488-20405092
Length = 534
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/59 (22%), Positives = 30/59 (50%)
Frame = +1
Query: 496 AAVLNYQGWLAGVHTQFDTQKAKFSKNNFALSYQSGDFALHTNVDNGKDFGGSIYQKVS 672
AA + GW+ GV+ + + +K + + ++Y+ D ++ + D G + Y+K +
Sbjct: 439 AAAAKHMGWIRGVYGEMEPYVSKNPRGAY-VNYRDLDLGVNDDGDGGGGVARARYEKAT 496
>09_02_0022 +
3065644-3065953,3066048-3067162,3067261-3067437,
3067535-3067648,3068614-3068718,3068930-3069064,
3069148-3069203,3069277-3069382,3069515-3069631,
3069705-3069831,3069915-3070141,3070164-3070727
Length = 1050
Score = 27.9 bits (59), Expect = 8.2
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = -2
Query: 428 NEVFNFPVL-VPVCGAKVPSRVTLRPAAILSWIVMSVANVLSVF 300
++V + VL + C + SR+ L PA+ LSW S LS F
Sbjct: 606 DQVLDVKVLKISECAQSLSSRLVLTPASKLSWFGFSENGELSSF 649
>05_03_0373 - 13194723-13195847,13196219-13196809
Length = 571
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 376 GTFAPQTGTKTGKLKTSFTNDTVAVNTNLDLDL 474
GT+ Q T TGK+ +FT + + LDLD+
Sbjct: 537 GTYVAQVTTATGKMLKTFTVEKGDNSLELDLDI 569
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,759,830
Number of Sequences: 37544
Number of extensions: 382118
Number of successful extensions: 1047
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1025
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1046
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -