Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0526
         (650 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000F33405 Cluster: transmembrane protease, serine 1...    36   0.84 

>UniRef50_UPI0000F33405 Cluster: transmembrane protease, serine 11B;
           n=1; Bos taurus|Rep: transmembrane protease, serine 11B
           - Bos Taurus
          Length = 389

 Score = 35.9 bits (79), Expect = 0.84
 Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
 Frame = +2

Query: 359 LNAEQVKALTDCANEAGQLALDSK--PAN*TTFARKVHGVIHRVFKTXXXXXXXXXXXLY 532
           +N++ +K L D +  + QL L  K  PA   +   K+  ++H+  K            + 
Sbjct: 89  INSKVIKLLPDSSGSSVQLQLTFKFPPAEKNSMRTKIKIILHQKLKDTMASWNAVPTSIK 148

Query: 533 ESAIKVFTQKKIYILYYYLNECSVRI 610
            + I +F     YI++YYLN C  R+
Sbjct: 149 VTGILLF-----YIIFYYLNSCGRRL 169


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 475,265,976
Number of Sequences: 1657284
Number of extensions: 6934088
Number of successful extensions: 15505
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 15172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15499
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 48760335122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)