Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0526
         (650 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_1031 - 10605581-10606088,10606360-10606420,10606448-106064...    28   7.4  

>12_01_1031 -
           10605581-10606088,10606360-10606420,10606448-10606491,
           10606664-10608382,10609848-10610791
          Length = 1091

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = +3

Query: 417 RSTPSLQTKQRLLGKFME*FIECLRLCPVFLILYKFNYM 533
           +  P+LQ  +++L         CL+ C ++L +YK +Y+
Sbjct: 445 KKNPTLQGMRQVLNLIYNNLPHCLKACLLYLSIYKEDYI 483


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,517,084
Number of Sequences: 37544
Number of extensions: 184643
Number of successful extensions: 386
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 386
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)