Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0526
         (650 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    22   4.5  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    22   5.9  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    22   5.9  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   7.8  

>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 7/21 (33%), Positives = 14/21 (66%)
 Frame = +2

Query: 548 VFTQKKIYILYYYLNECSVRI 610
           +FT  K+  ++Y + ECS+ +
Sbjct: 138 IFTSGKLKEMFYLIIECSLNL 158


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +2

Query: 101 TKNLEAGQQLVKRTMDELIQQKQTTEKV 184
           T+NLE     +++T  EL  +KQ T+++
Sbjct: 356 TRNLELLTDKLQQTYRELDGEKQKTDRL 383


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +2

Query: 101 TKNLEAGQQLVKRTMDELIQQKQTTEKV 184
           T+NLE     +++T  EL  +KQ T+++
Sbjct: 356 TRNLELLTDKLQQTYRELDGEKQKTDRL 383


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -2

Query: 487 KHSMNHSMNFPSKRCLVCRLGVERQLSRLICAVG*SLNL 371
           KHS  H++  P+K   + + G     SRL    G  +NL
Sbjct: 96  KHSYLHTITSPNKFVRLYQDGRVLYSSRLTIKAGCPMNL 134


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 133,789
Number of Sequences: 438
Number of extensions: 2194
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)