Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0525
(347 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces... 118 3e-28
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa... 31 0.039
SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces... 26 1.5
SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3 Rfp1|Schizo... 25 3.4
SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|... 25 3.4
SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch... 24 5.9
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb... 24 5.9
SPAC30.03c |tsn1|tsn, mug90|translin|Schizosaccharomyces pombe|c... 24 5.9
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc... 24 5.9
SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyc... 24 7.8
>SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 195
Score = 118 bits (284), Expect = 3e-28
Identities = 56/92 (60%), Positives = 70/92 (76%)
Frame = +3
Query: 3 KILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHL 182
+ILPKP K+RV QKRPRSRTLT+V++AILED+VFP EI+GKR R DG + IKV L
Sbjct: 99 RILPKPGRKSRVT--QKRPRSRTLTAVHNAILEDIVFPTEIIGKRTRQATDGRKTIKVFL 156
Query: 183 DKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 278
D T+++K+ +F SVY KLTG+ VTFEFP
Sbjct: 157 DNRDANTVDYKLGSFSSVYHKLTGKNVTFEFP 188
>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 941
Score = 31.5 bits (68), Expect = 0.039
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Frame = +3
Query: 66 RTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTF-QSVYK 242
++L + YD + EDL ++ +GK+ ++ ++L VHL + TIE + F Q+V
Sbjct: 565 QSLFASYDKLQEDL---SKRLGKKATLRKSPAKLYYVHLKLSGNETIERFIKKFTQAVLF 621
Query: 243 KLTGREVTFEFP 278
+ T +F+ P
Sbjct: 622 QSTKSTASFQLP 633
>SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 404
Score = 26.2 bits (55), Expect = 1.5
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +2
Query: 50 KEATLKDIDLCVRCYPRGLGLPC 118
++AT++++D C C RGL + C
Sbjct: 110 RKATIRNVDYCSACGGRGLFICC 132
>SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3
Rfp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 254
Score = 25.0 bits (52), Expect = 3.4
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +3
Query: 12 PKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKR 137
P S + R N+++ RSR S + + LED+++ V R
Sbjct: 49 PVLSPRRRRMNRRRNERSRNFPSNHLSYLEDMIYLGPQVSTR 90
>SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 532
Score = 25.0 bits (52), Expect = 3.4
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -2
Query: 199 VCWFLSKCTLMSCEPSNLTLMR 134
+C FL K T SC NL L++
Sbjct: 207 LCSFLPKSTYRSCRSDNLDLLK 228
>SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 644
Score = 24.2 bits (50), Expect = 5.9
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -2
Query: 271 SKVTSRPVSFLYTDWKVSTLCSIVVCWFLSKCTLMSCE 158
SK +S + W+ S L +++ W S CT SCE
Sbjct: 343 SKEQQNKISGFSSIWR-SCLEPLIILWPRSLCTEESCE 379
>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1334
Score = 24.2 bits (50), Expect = 5.9
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +3
Query: 177 HLDKNQQTTIEHKVDTFQSV 236
H+D NQQT ++H+ F+SV
Sbjct: 967 HID-NQQTLLQHRNQWFESV 985
>SPAC30.03c |tsn1|tsn, mug90|translin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 236
Score = 24.2 bits (50), Expect = 5.9
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -1
Query: 140 DALAYDLSREDQVLEDSIVHR 78
D L YDL R + V+ D +H+
Sbjct: 214 DGLKYDLKRSEDVVYDLRIHK 234
>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 997
Score = 24.2 bits (50), Expect = 5.9
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = -1
Query: 128 YDLSREDQVLEDSIVHRGQCP*AWPLLFVSN 36
YD +D L++ I H CP A+ L +N
Sbjct: 76 YDWEDDDDPLKEHITHSPSCPWAYILSSKNN 106
>SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 490
Score = 23.8 bits (49), Expect = 7.8
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = +3
Query: 168 IKVHLDKNQQTTIEHKVDTFQSV 236
+K+HL+K +T + HK + V
Sbjct: 271 VKIHLNKPAKTLVPHKTQSLVDV 293
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,273,464
Number of Sequences: 5004
Number of extensions: 22309
Number of successful extensions: 70
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 104153322
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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