Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0525
         (347 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0683 + 10363963-10364037,10364112-10364185,10364312-103644...   104   2e-23
05_03_0610 - 16167557-16167679,16168236-16168418,16169291-161694...   102   9e-23
02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679     31   0.19 
06_01_0983 - 7630651-7630683,7630717-7630942,7630993-7631234,763...    30   0.57 
12_01_0191 + 1413287-1413346,1413504-1413632,1416819-1416998,141...    29   0.76 
03_04_0228 - 18989688-18989807,18990300-18990345,18990452-189905...    27   3.1  
05_05_0120 + 22520285-22520569                                         27   4.0  
06_01_0209 + 1587656-1587876,1587964-1588055,1590520-1590545,159...    27   5.3  
11_02_0078 - 8074247-8074837,8075815-8076341,8076453-8077022,807...    26   7.1  
08_02_0396 - 16654603-16655030,16655803-16655906,16655988-166565...    26   7.1  
04_03_0579 + 17481012-17481219,17481776-17481849,17482207-174822...    26   7.1  
10_01_0254 - 2677811-2677911,2678132-2678313,2678646-2678694,268...    26   9.3  

>03_02_0683 +
           10363963-10364037,10364112-10364185,10364312-10364435,
           10365047-10365229,10365478-10365600
          Length = 192

 Score =  104 bits (249), Expect = 2e-23
 Identities = 43/76 (56%), Positives = 65/76 (85%)
 Frame = +3

Query: 51  KRPRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQ 230
           +RPR+RTLT+V+D ILED+V+PAEIVGKRIR +LDG+++IK+ LD  ++   E+K++TF 
Sbjct: 112 QRPRTRTLTAVHDGILEDVVYPAEIVGKRIRYRLDGAKVIKIFLDPKERNNTEYKLETFS 171

Query: 231 SVYKKLTGREVTFEFP 278
           +VY++L G++V FE+P
Sbjct: 172 AVYRRLCGKDVAFEYP 187


>05_03_0610 -
           16167557-16167679,16168236-16168418,16169291-16169414,
           16169514-16169626,16169668-16169742
          Length = 205

 Score =  102 bits (244), Expect = 9e-23
 Identities = 42/75 (56%), Positives = 62/75 (82%)
 Frame = +3

Query: 54  RPRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQS 233
           RPR+RTLT+V+D ILED+V+PAEIVGKR+R  LDG +++K+ LD  ++   E+K+DTF S
Sbjct: 126 RPRTRTLTAVHDGILEDVVYPAEIVGKRVRYHLDGRKIMKIFLDPKERNNTEYKLDTFSS 185

Query: 234 VYKKLTGREVTFEFP 278
           VY++L G++V F++P
Sbjct: 186 VYRRLCGKDVVFDYP 200


>02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679
          Length = 129

 Score = 31.5 bits (68), Expect = 0.19
 Identities = 13/25 (52%), Positives = 19/25 (76%)
 Frame = +3

Query: 57  PRSRTLTSVYDAILEDLVFPAEIVG 131
           PR+RTL +V+D ILED+V    ++G
Sbjct: 99  PRTRTLITVHDGILEDVVSQLRLLG 123


>06_01_0983 -
           7630651-7630683,7630717-7630942,7630993-7631234,
           7631502-7631591,7631680-7631845,7632225-7633191,
           7633402-7633591,7633908-7634048,7634416-7634736
          Length = 791

 Score = 29.9 bits (64), Expect = 0.57
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +3

Query: 108 VFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHK 215
           +FPA I G  +  KLD ++L K H D+ +   ++HK
Sbjct: 589 IFPARIGGYLLDSKLDRNEL-KKHFDQTRANRLDHK 623


>12_01_0191 +
           1413287-1413346,1413504-1413632,1416819-1416998,
           1417747-1417938,1418533-1418673,1418785-1418912,
           1419088-1419262,1419664-1419852,1420628-1420749,
           1420829-1420874
          Length = 453

 Score = 29.5 bits (63), Expect = 0.76
 Identities = 15/39 (38%), Positives = 25/39 (64%)
 Frame = +3

Query: 57  PRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIK 173
           P +RTLT+ +D IL+D +  A+I GK +    + + +IK
Sbjct: 86  PNTRTLTNAHDGILDD-INCAQIAGKHVGDHSNCANVIK 123


>03_04_0228 -
           18989688-18989807,18990300-18990345,18990452-18990552,
           18990624-18990702,18990788-18990868,18991440-18991502,
           18994171-18994246,18994980-18995246,18995994-18996076,
           18996792-18996922,18997043-18997174
          Length = 392

 Score = 27.5 bits (58), Expect = 3.1
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 44  QTKEATLKDIDLCVRCYPRGLG 109
           Q ++++LK    CVRC+P G G
Sbjct: 184 QKRDSSLKYQTRCVRCFPNGTG 205


>05_05_0120 + 22520285-22520569
          Length = 94

 Score = 27.1 bits (57), Expect = 4.0
 Identities = 14/23 (60%), Positives = 17/23 (73%)
 Frame = -3

Query: 120 QQGRPSPRG*HRTQRSMSLSVAS 52
           QQ RPSP   HR  R+MS++VAS
Sbjct: 56  QQARPSPAARHR--RAMSVAVAS 76


>06_01_0209 +
           1587656-1587876,1587964-1588055,1590520-1590545,
           1591130-1591370,1591459-1591554,1591639-1591754,
           1591837-1591917,1592597-1592720,1593222-1593271,
           1593735-1593825,1594386-1594421,1594502-1594602,
           1594684-1594800
          Length = 463

 Score = 26.6 bits (56), Expect = 5.3
 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = +3

Query: 114 PAEIVGKRIRVKLDG-SQLIKVHLDK 188
           PA +VG+R+ VKL G  +L K  +DK
Sbjct: 10  PAAVVGERVAVKLRGYFELAKEEIDK 35


>11_02_0078 -
           8074247-8074837,8075815-8076341,8076453-8077022,
           8077725-8077752
          Length = 571

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -2

Query: 58  GLFCLLATRVLWLGLG 11
           GL+ +LA R+LWL +G
Sbjct: 517 GLYTVLAPRILWLAIG 532


>08_02_0396 -
           16654603-16655030,16655803-16655906,16655988-16656579,
           16656820-16656993,16657105-16657309
          Length = 500

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 186 KNQQTTIEHKVDTFQSVYKKL 248
           KNQ+ +I HKVDT     +KL
Sbjct: 188 KNQRASISHKVDTVSKESEKL 208


>04_03_0579 +
           17481012-17481219,17481776-17481849,17482207-17482211,
           17482523-17482607,17484144-17484231,17484307-17484398,
           17484903-17485055
          Length = 234

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 18/50 (36%), Positives = 27/50 (54%)
 Frame = -2

Query: 154 SNLTLMRLPTISAGKTKSSRIASYTEVNVLERGLFCLLATRVLWLGLGRI 5
           S LTL   P + A +   S   S+  V  L +GL C+++ +V +L L RI
Sbjct: 55  SLLTLCLNPIVFAPQCMESLEISFARV-ALCKGLACVISEQVRYLALVRI 103


>10_01_0254 -
           2677811-2677911,2678132-2678313,2678646-2678694,
           2680659-2680755,2681119-2681436
          Length = 248

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = -2

Query: 205 IVVCWFLSK--CTLMSCEPSNLTLMRLPTISAGKTKSSRIASYTEVNVLER 59
           I   WF  +   T++S  P  L +  +PT      ++SRI S T + V  R
Sbjct: 34  IATYWFEDQRASTIISRTPMELAVREIPTYWFKNQRASRIISRTPMEVAVR 84


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,461,307
Number of Sequences: 37544
Number of extensions: 152203
Number of successful extensions: 374
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 373
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 374
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 506210712
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)