Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0525
         (347 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20876| Best HMM Match : Ribosomal_S7e (HMM E-Value=0)               62   9e-11
SB_8510| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   0.59 
SB_18929| Best HMM Match : BRCT (HMM E-Value=1.4e-08)                  28   2.4  
SB_19612| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   3.2  
SB_7447| Best HMM Match : CHGN (HMM E-Value=0)                         27   4.2  
SB_17428| Best HMM Match : Hydrolase (HMM E-Value=0.0047)              26   9.7  
SB_51232| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.7  
SB_50676| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   9.7  

>SB_20876| Best HMM Match : Ribosomal_S7e (HMM E-Value=0)
          Length = 157

 Score = 62.5 bits (145), Expect = 9e-11
 Identities = 25/34 (73%), Positives = 31/34 (91%)
 Frame = +3

Query: 177 HLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFP 278
           HLDK QQTTI+HK++TF +VYKKLTG++V FEFP
Sbjct: 121 HLDKTQQTTIDHKLETFSTVYKKLTGKDVVFEFP 154


>SB_8510| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 320

 Score = 29.9 bits (64), Expect = 0.59
 Identities = 16/60 (26%), Positives = 30/60 (50%)
 Frame = -2

Query: 262 TSRPVSFLYTDWKVSTLCSIVVCWFLSKCTLMSCEPSNLTLMRLPTISAGKTKSSRIASY 83
           T+R  ++ ++DW ++  C    CW +S  T+ S     LT +++P  +  + K    A Y
Sbjct: 120 TNRCGAYYHSDWLIAIPCRRRACWTVSLITIFS---QVLTNIKVPIPAYSREKGYYTAHY 176


>SB_18929| Best HMM Match : BRCT (HMM E-Value=1.4e-08)
          Length = 1213

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -3

Query: 291 TNKVRGTRRSLRVPLASCIQTGRCPL 214
           TN+ +G+RRS R P  S  +T R P+
Sbjct: 294 TNETKGSRRSTRNPNQSPAETARTPI 319


>SB_19612| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 932

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = -2

Query: 202 VVCWFLSKCTLMSCEPSNLTLMRLPTISAGKTKSSR 95
           V+CW L + + +  EP N  L +L ++  GK K S+
Sbjct: 339 VICWVLGEYSYIVSEP-NTVLEQLHSLLDGKLKDSK 373


>SB_7447| Best HMM Match : CHGN (HMM E-Value=0)
          Length = 918

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 15/54 (27%), Positives = 24/54 (44%)
 Frame = +3

Query: 45  KQKRPRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTI 206
           K+KRP       ++DAI     F     G   + KLD   L  +  D +++ T+
Sbjct: 799 KRKRPSIEKFAIIFDAITTKARFARYKNGSSKKHKLDKRPLFAMDSDSDEELTV 852


>SB_17428| Best HMM Match : Hydrolase (HMM E-Value=0.0047)
          Length = 228

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 111 FPAEIVGKRIRVKLDGSQLIKVH 179
           F  E + K  R+ LDG QLI +H
Sbjct: 120 FNYETLNKAFRLLLDGGQLIAIH 142


>SB_51232| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1676

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -2

Query: 211 CSIVVCWFLSKCTLMSCEPSN 149
           C    CWF +KC  MS +  N
Sbjct: 123 CEECCCWFHAKCICMSAQSYN 143


>SB_50676| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 838

 Score = 25.8 bits (54), Expect = 9.7
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -2

Query: 211 CSIVVCWFLSKCTLMSCEPSN 149
           C    CWF +KC  MS +  N
Sbjct: 123 CEECCCWFHAKCICMSAQSYN 143


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,748,438
Number of Sequences: 59808
Number of extensions: 180996
Number of successful extensions: 472
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 471
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 523129866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)