Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0525
(347 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75714-1|CAB00058.1| 194|Caenorhabditis elegans Hypothetical pr... 134 2e-32
U70849-11|AAK29800.1| 897|Caenorhabditis elegans Hypothetical p... 28 2.1
U70849-10|AAK29799.1| 910|Caenorhabditis elegans Hypothetical p... 28 2.1
Z66519-4|CAA91373.1| 210|Caenorhabditis elegans Hypothetical pr... 27 4.9
AF036706-9|AAK39281.1| 681|Caenorhabditis elegans Hypothetical ... 27 4.9
Z49130-2|CAA88966.1| 396|Caenorhabditis elegans Hypothetical pr... 26 6.4
U88179-4|AAU05547.1| 576|Caenorhabditis elegans Hypothetical pr... 26 6.4
U88179-3|AAX88809.1| 751|Caenorhabditis elegans Hypothetical pr... 26 6.4
U88179-2|AAU05546.1| 770|Caenorhabditis elegans Hypothetical pr... 26 6.4
U41994-7|AAY55868.1| 155|Caenorhabditis elegans Hypothetical pr... 26 6.4
AC087079-12|AAK27874.2| 472|Caenorhabditis elegans Hypothetical... 26 6.4
AC024211-6|AAF36067.2| 1454|Caenorhabditis elegans Hypothetical ... 26 6.4
Z68315-2|CAA92668.1| 535|Caenorhabditis elegans Hypothetical pr... 26 8.5
Z49938-5|CAD31752.1| 1467|Caenorhabditis elegans Hypothetical pr... 26 8.5
Z49938-4|CAA90189.3| 2180|Caenorhabditis elegans Hypothetical pr... 26 8.5
Z49938-1|CAD59171.1| 1216|Caenorhabditis elegans Hypothetical pr... 26 8.5
Z46811-2|CAD31753.1| 1467|Caenorhabditis elegans Hypothetical pr... 26 8.5
Z46811-1|CAA86842.3| 2180|Caenorhabditis elegans Hypothetical pr... 26 8.5
AF316540-1|AAK01633.1| 1487|Caenorhabditis elegans PTP-3B protein. 26 8.5
AF316539-1|AAK01632.1| 2200|Caenorhabditis elegans PTP-3A protein. 26 8.5
>Z75714-1|CAB00058.1| 194|Caenorhabditis elegans Hypothetical
protein ZC434.2 protein.
Length = 194
Score = 134 bits (324), Expect = 2e-32
Identities = 60/95 (63%), Positives = 79/95 (83%), Gaps = 1/95 (1%)
Frame = +3
Query: 3 KILPKPSHKTRVA-NKQKRPRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVH 179
+ILPKP ++ KQKRPRSRTLT+V+DA L++LV+PAE+VG+RIRVKLDG ++ KVH
Sbjct: 98 RILPKPQRGSKARPQKQKRPRSRTLTAVHDAWLDELVYPAEVVGRRIRVKLDGKKVYKVH 157
Query: 180 LDKNQQTTIEHKVDTFQSVYKKLTGREVTFEFPEP 284
LDK+ QT + HK+ F SVY+KLTG++VTFEFP+P
Sbjct: 158 LDKSHQTNVGHKIGVFASVYRKLTGKDVTFEFPDP 192
>U70849-11|AAK29800.1| 897|Caenorhabditis elegans Hypothetical
protein F29B9.2b protein.
Length = 897
Score = 27.9 bits (59), Expect = 2.1
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +3
Query: 144 VKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEF 275
VK+ GS +D Q+T K+DTF+ +++ R + + F
Sbjct: 379 VKIMGSDYEVDTIDVYNQSTYSMKLDTFRKLFRDTKNRPLLYNF 422
>U70849-10|AAK29799.1| 910|Caenorhabditis elegans Hypothetical
protein F29B9.2a protein.
Length = 910
Score = 27.9 bits (59), Expect = 2.1
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +3
Query: 144 VKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEF 275
VK+ GS +D Q+T K+DTF+ +++ R + + F
Sbjct: 392 VKIMGSDYEVDTIDVYNQSTYSMKLDTFRKLFRDTKNRPLLYNF 435
>Z66519-4|CAA91373.1| 210|Caenorhabditis elegans Hypothetical
protein B0334.4 protein.
Length = 210
Score = 26.6 bits (56), Expect = 4.9
Identities = 20/71 (28%), Positives = 35/71 (49%)
Frame = +3
Query: 57 PRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSV 236
P S + + +LE + IV K++ VK S L +V ++ T I+ +SV
Sbjct: 27 PNSHAKHIISEDVLERQITDNTIVTKKLIVKQGSSILKRVPRWISRMTDIQVVPVIEESV 86
Query: 237 YKKLTGREVTF 269
Y K++ + VT+
Sbjct: 87 YDKVSKKLVTY 97
>AF036706-9|AAK39281.1| 681|Caenorhabditis elegans Hypothetical
protein T07A9.9a protein.
Length = 681
Score = 26.6 bits (56), Expect = 4.9
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +3
Query: 27 KTRVANKQKRPRSRTLTSVYDAILEDLVFPAE 122
K ++ K K RSR+L++V A ++L FP E
Sbjct: 599 KPQLGKKMKVGRSRSLSAVRPAPRDELAFPDE 630
>Z49130-2|CAA88966.1| 396|Caenorhabditis elegans Hypothetical
protein T06D8.3 protein.
Length = 396
Score = 26.2 bits (55), Expect = 6.4
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -2
Query: 238 YTDWKVSTLCSIVVCWFLSKCTLMSCEPSNLTLMRLPTI 122
+ D V+ + I + WFL C L E ++T+ R P +
Sbjct: 275 WRDIWVAWVIGIFMAWFLCYCVLCFQEVYHMTIERTPIV 313
>U88179-4|AAU05547.1| 576|Caenorhabditis elegans Hypothetical
protein R57.1b protein.
Length = 576
Score = 26.2 bits (55), Expect = 6.4
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +3
Query: 33 RVANKQKRPRSRTLTSVYDAILEDLVFPAEIVG-KRIRVKLDGS 161
+V N KR RSR ++YD ++ VFP + G +IRV GS
Sbjct: 471 QVENPSKRERSRGRKTLYDTWMK--VFPDKKAGVPKIRVPGGGS 512
>U88179-3|AAX88809.1| 751|Caenorhabditis elegans Hypothetical
protein R57.1c protein.
Length = 751
Score = 26.2 bits (55), Expect = 6.4
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +3
Query: 33 RVANKQKRPRSRTLTSVYDAILEDLVFPAEIVG-KRIRVKLDGS 161
+V N KR RSR ++YD ++ VFP + G +IRV GS
Sbjct: 471 QVENPSKRERSRGRKTLYDTWMK--VFPDKKAGVPKIRVPGGGS 512
>U88179-2|AAU05546.1| 770|Caenorhabditis elegans Hypothetical
protein R57.1a protein.
Length = 770
Score = 26.2 bits (55), Expect = 6.4
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +3
Query: 33 RVANKQKRPRSRTLTSVYDAILEDLVFPAEIVG-KRIRVKLDGS 161
+V N KR RSR ++YD ++ VFP + G +IRV GS
Sbjct: 490 QVENPSKRERSRGRKTLYDTWMK--VFPDKKAGVPKIRVPGGGS 531
>U41994-7|AAY55868.1| 155|Caenorhabditis elegans Hypothetical
protein F59A6.10 protein.
Length = 155
Score = 26.2 bits (55), Expect = 6.4
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = -2
Query: 253 PVSFLYTDWKVSTLCSIVVCWFLSKCTLMSCEPS 152
P+S Y +++ + C+ VVC KC L + +PS
Sbjct: 97 PLSVYYINFENYSACAAVVCPPSQKCELENGKPS 130
>AC087079-12|AAK27874.2| 472|Caenorhabditis elegans Hypothetical
protein Y37E3.13 protein.
Length = 472
Score = 26.2 bits (55), Expect = 6.4
Identities = 15/50 (30%), Positives = 23/50 (46%)
Frame = -2
Query: 211 CSIVVCWFLSKCTLMSCEPSNLTLMRLPTISAGKTKSSRIASYTEVNVLE 62
C +C F+ C ++SC ++R GKT+ +R Y VLE
Sbjct: 334 CQFTICTFIGVCCVISC-----CVLRTGGGGRGKTRPNR--EYLHTKVLE 376
>AC024211-6|AAF36067.2| 1454|Caenorhabditis elegans Hypothetical
protein Y76B12C.7 protein.
Length = 1454
Score = 26.2 bits (55), Expect = 6.4
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +3
Query: 120 EIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREVTFEF-PEPYL 290
++ I + DG Q+ +VH+D N VD + ++ + GR + +E EPY+
Sbjct: 573 QVTSTCIALVTDGQQMQEVHIDSNFPVIQASIVDPYVALLTQ-NGRLLLYELVMEPYV 629
>Z68315-2|CAA92668.1| 535|Caenorhabditis elegans Hypothetical
protein F28C6.2 protein.
Length = 535
Score = 25.8 bits (54), Expect = 8.5
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Frame = +3
Query: 87 DAILEDLVFPAEIVGKRIRVKL--DGSQLIKVH-LDKNQQTTIEHKVDTFQSVYKKLTGR 257
D+I E+ + P I+ + + KL G+ L H + KN TI + T + K+TG+
Sbjct: 327 DSISEEFL-PINIIAQEMLEKLMSSGNNLDVCHRMLKNTTATITRVIKTLEVRQPKITGQ 385
Query: 258 E 260
E
Sbjct: 386 E 386
>Z49938-5|CAD31752.1| 1467|Caenorhabditis elegans Hypothetical
protein C09D8.1b protein.
Length = 1467
Score = 25.8 bits (54), Expect = 8.5
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -2
Query: 136 RLPTISAGKTKSSRIASYTEVNVLERGLFCLLATR 32
+LP +S K R A +++N + FC+LA +
Sbjct: 392 QLPVVSIDKENPKRFAVVSDLNAHKPYAFCVLAVK 426
>Z49938-4|CAA90189.3| 2180|Caenorhabditis elegans Hypothetical protein
C09D8.1a protein.
Length = 2180
Score = 25.8 bits (54), Expect = 8.5
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -2
Query: 136 RLPTISAGKTKSSRIASYTEVNVLERGLFCLLATR 32
+LP +S K R A +++N + FC+LA +
Sbjct: 1105 QLPVVSIDKENPKRFAVVSDLNAHKPYAFCVLAVK 1139
>Z49938-1|CAD59171.1| 1216|Caenorhabditis elegans Hypothetical
protein C09D8.1c protein.
Length = 1216
Score = 25.8 bits (54), Expect = 8.5
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -2
Query: 136 RLPTISAGKTKSSRIASYTEVNVLERGLFCLLATR 32
+LP +S K R A +++N + FC+LA +
Sbjct: 141 QLPVVSIDKENPKRFAVVSDLNAHKPYAFCVLAVK 175
>Z46811-2|CAD31753.1| 1467|Caenorhabditis elegans Hypothetical
protein C09D8.1b protein.
Length = 1467
Score = 25.8 bits (54), Expect = 8.5
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -2
Query: 136 RLPTISAGKTKSSRIASYTEVNVLERGLFCLLATR 32
+LP +S K R A +++N + FC+LA +
Sbjct: 392 QLPVVSIDKENPKRFAVVSDLNAHKPYAFCVLAVK 426
>Z46811-1|CAA86842.3| 2180|Caenorhabditis elegans Hypothetical protein
C09D8.1a protein.
Length = 2180
Score = 25.8 bits (54), Expect = 8.5
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -2
Query: 136 RLPTISAGKTKSSRIASYTEVNVLERGLFCLLATR 32
+LP +S K R A +++N + FC+LA +
Sbjct: 1105 QLPVVSIDKENPKRFAVVSDLNAHKPYAFCVLAVK 1139
>AF316540-1|AAK01633.1| 1487|Caenorhabditis elegans PTP-3B protein.
Length = 1487
Score = 25.8 bits (54), Expect = 8.5
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -2
Query: 136 RLPTISAGKTKSSRIASYTEVNVLERGLFCLLATR 32
+LP +S K R A +++N + FC+LA +
Sbjct: 392 QLPVVSIDKENPKRFAVVSDLNAHKPYAFCVLAVK 426
>AF316539-1|AAK01632.1| 2200|Caenorhabditis elegans PTP-3A protein.
Length = 2200
Score = 25.8 bits (54), Expect = 8.5
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -2
Query: 136 RLPTISAGKTKSSRIASYTEVNVLERGLFCLLATR 32
+LP +S K R A +++N + FC+LA +
Sbjct: 1105 QLPVVSIDKENPKRFAVVSDLNAHKPYAFCVLAVK 1139
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,113,651
Number of Sequences: 27780
Number of extensions: 129740
Number of successful extensions: 349
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 337
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 349
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 461821634
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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