Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0525
(347 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g48830.2 68414.m05465 40S ribosomal protein S7 (RPS7A) simila... 107 2e-24
At1g48830.1 68414.m05464 40S ribosomal protein S7 (RPS7A) simila... 107 2e-24
At5g16130.1 68418.m01884 40S ribosomal protein S7 (RPS7C) 40S ri... 102 6e-23
At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) simila... 99 9e-22
At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) simila... 99 9e-22
At3g19590.1 68416.m02484 WD-40 repeat family protein / mitotic c... 30 0.37
At1g49910.1 68414.m05597 WD-40 repeat family protein / mitotic c... 30 0.37
At1g11130.1 68414.m01274 leucine-rich repeat family protein / pr... 29 0.85
At1g64590.1 68414.m07321 short-chain dehydrogenase/reductase (SD... 27 2.6
At3g01380.1 68416.m00060 phosphatidylinositolglycan class N (PIG... 27 4.5
At3g49400.1 68416.m05400 transducin family protein / WD-40 repea... 26 6.0
At2g37040.1 68415.m04544 phenylalanine ammonia-lyase 1 (PAL1) ne... 26 6.0
At5g55960.1 68418.m06979 expressed protein 26 7.9
>At1g48830.2 68414.m05465 40S ribosomal protein S7 (RPS7A) similar
to 40S ribosomal protein S7 homolog GI:5532505 from
[Brassica oleracea]
Length = 191
Score = 107 bits (257), Expect = 2e-24
Identities = 47/76 (61%), Positives = 64/76 (84%)
Frame = +3
Query: 51 KRPRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQ 230
KRPR+RTLTSV++AIL+D+V PAEIVGKR R +LDG++++KV LD ++ E+KV+ F
Sbjct: 112 KRPRNRTLTSVHEAILDDVVLPAEIVGKRTRYRLDGTKIMKVFLDPKERNNTEYKVEAFS 171
Query: 231 SVYKKLTGREVTFEFP 278
+VYKKLTG++V FEFP
Sbjct: 172 AVYKKLTGKDVVFEFP 187
>At1g48830.1 68414.m05464 40S ribosomal protein S7 (RPS7A) similar
to 40S ribosomal protein S7 homolog GI:5532505 from
[Brassica oleracea]
Length = 191
Score = 107 bits (257), Expect = 2e-24
Identities = 47/76 (61%), Positives = 64/76 (84%)
Frame = +3
Query: 51 KRPRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQ 230
KRPR+RTLTSV++AIL+D+V PAEIVGKR R +LDG++++KV LD ++ E+KV+ F
Sbjct: 112 KRPRNRTLTSVHEAILDDVVLPAEIVGKRTRYRLDGTKIMKVFLDPKERNNTEYKVEAFS 171
Query: 231 SVYKKLTGREVTFEFP 278
+VYKKLTG++V FEFP
Sbjct: 172 AVYKKLTGKDVVFEFP 187
>At5g16130.1 68418.m01884 40S ribosomal protein S7 (RPS7C) 40S
ribosomal protein S7 homolog - Brassica oleracea,
EMBL:AF144752
Length = 190
Score = 102 bits (245), Expect = 6e-23
Identities = 44/76 (57%), Positives = 63/76 (82%)
Frame = +3
Query: 51 KRPRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQ 230
+RPR+RTLTSV++A+LED+ FPAEIVGKR R +LDGS+++KV LD ++ E+K++T
Sbjct: 112 QRPRNRTLTSVHEAMLEDVAFPAEIVGKRTRYRLDGSKIMKVFLDAKEKNNTEYKLETMV 171
Query: 231 SVYKKLTGREVTFEFP 278
VY+KLTG++V FE+P
Sbjct: 172 GVYRKLTGKDVVFEYP 187
>At3g02560.2 68416.m00247 40S ribosomal protein S7 (RPS7B) similar
to ribosomal protein S7 GB:AAD26256 from [Secale
cereale]
Length = 191
Score = 98.7 bits (235), Expect = 9e-22
Identities = 42/76 (55%), Positives = 62/76 (81%)
Frame = +3
Query: 51 KRPRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQ 230
+RPR+RTLTSV++A+LED+ +PAEIVGKR R +LDG++++KV LD + E+K++T
Sbjct: 112 QRPRNRTLTSVHEAMLEDVAYPAEIVGKRTRYRLDGTKIMKVFLDSKLKNDTEYKLETMV 171
Query: 231 SVYKKLTGREVTFEFP 278
VY+KLTG++V FE+P
Sbjct: 172 GVYRKLTGKDVVFEYP 187
>At3g02560.1 68416.m00246 40S ribosomal protein S7 (RPS7B) similar
to ribosomal protein S7 GB:AAD26256 from [Secale
cereale]
Length = 191
Score = 98.7 bits (235), Expect = 9e-22
Identities = 42/76 (55%), Positives = 62/76 (81%)
Frame = +3
Query: 51 KRPRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQ 230
+RPR+RTLTSV++A+LED+ +PAEIVGKR R +LDG++++KV LD + E+K++T
Sbjct: 112 QRPRNRTLTSVHEAMLEDVAYPAEIVGKRTRYRLDGTKIMKVFLDSKLKNDTEYKLETMV 171
Query: 231 SVYKKLTGREVTFEFP 278
VY+KLTG++V FE+P
Sbjct: 172 GVYRKLTGKDVVFEYP 187
>At3g19590.1 68416.m02484 WD-40 repeat family protein / mitotic
checkpoint protein, putative contains 5 WD-40 repeats
(PF00400) (1 weak); similar to testis mitotic checkpoint
protein BUB3 (GB:AAC28439,SP|O43684)[Homo sapiens]
Length = 340
Score = 30.3 bits (65), Expect = 0.37
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2
Query: 44 QTKEATLKDIDLCVRCYPRGLG 109
Q +E++LK CVRCYP G G
Sbjct: 179 QRRESSLKYQTRCVRCYPNGTG 200
>At1g49910.1 68414.m05597 WD-40 repeat family protein / mitotic
checkpoint protein, putative contains 5 WD-40 repeats
(PF00400) (1 weak); similar to testis mitotic checkpoint
protein BUB3 (GB:AAC28439,SP:O43684)[Homo sapiens]
Length = 339
Score = 30.3 bits (65), Expect = 0.37
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2
Query: 44 QTKEATLKDIDLCVRCYPRGLG 109
Q +E++LK CVRCYP G G
Sbjct: 178 QRRESSLKYQTRCVRCYPNGTG 199
>At1g11130.1 68414.m01274 leucine-rich repeat family protein /
protein kinase family protein contains leucine
rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to leucine-rich
repeat transmembrane protein kinase 2 [Zea mays]
gi|3360291|gb|AAC27895
Length = 768
Score = 29.1 bits (62), Expect = 0.85
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = -2
Query: 163 CEPSNLTLMRLPTISAGKTKSSRIASYTEVNVLE 62
C+ SN+T +R+P + G S +A ++ + V++
Sbjct: 66 CDSSNITEIRIPGMKVGGGLSDTLADFSSIQVMD 99
>At1g64590.1 68414.m07321 short-chain dehydrogenase/reductase (SDR)
family protein contains INTERPRO family IPR002198
short-chain dehydrogenase/reductase (SDR) superfamily
Length = 334
Score = 27.5 bits (58), Expect = 2.6
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +3
Query: 117 AEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSV 236
AE RI + +++I +HLD + T++ VD F+S+
Sbjct: 71 AEETKARILSEFPDAEIIVMHLDLSSLTSVRRFVDDFESL 110
>At3g01380.1 68416.m00060 phosphatidylinositolglycan class N (PIG-N)
family protein similar to phosphatidylinositolglycan
class N short form GB:BAA82620 [gi:5631308] [Mus
musculus]
Length = 921
Score = 26.6 bits (56), Expect = 4.5
Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = -2
Query: 202 VVCWFLSKCTLMSCE-PSNLTLMRLPTISAGKT 107
+ CWFLS TLM E P N L+ P + A T
Sbjct: 647 ISCWFLSVFTLMPAEIPDNNNLVS-PFLGANDT 678
>At3g49400.1 68416.m05400 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400); low
similarity (47%) to Agamous-like MADS box protein AGL5
(SP:P29385) {Arabidopsis thaliana}
Length = 892
Score = 26.2 bits (55), Expect = 6.0
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = -2
Query: 214 LCSIVVCWFLSKCTLMSCEPSNLTLMRLPTISAGKTKSSRIASYTEVNVLERGLFC 47
+C WF C M+ E + TL LP+ + KS +S+++V LFC
Sbjct: 820 VCPPTPLWFCKCCNRMTLELAPETLFALPSFPS-DLKSLPKSSFSKVASKPFCLFC 874
>At2g37040.1 68415.m04544 phenylalanine ammonia-lyase 1 (PAL1)
nearly identical to SP|P35510
Length = 725
Score = 26.2 bits (55), Expect = 6.0
Identities = 13/44 (29%), Positives = 23/44 (52%)
Frame = +3
Query: 132 KRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREV 263
+++R + LI +KN T+I HK+ F+ K + +EV
Sbjct: 600 QKLRQVIVDHALINGESEKNAVTSIFHKIGAFEEELKAVLPKEV 643
>At5g55960.1 68418.m06979 expressed protein
Length = 648
Score = 25.8 bits (54), Expect = 7.9
Identities = 8/20 (40%), Positives = 16/20 (80%)
Frame = -1
Query: 242 LVYRLEGVHFMFNSSLLVFV 183
L++RL +HF++ S++L F+
Sbjct: 523 LLFRLYNIHFLYMSTVLAFI 542
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,757,026
Number of Sequences: 28952
Number of extensions: 120080
Number of successful extensions: 321
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 319
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 321
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 429398688
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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