Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0524
         (716 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   2.9  
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         22   5.0  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    22   5.0  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    22   5.0  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   6.7  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    21   8.8  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    21   8.8  

>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +1

Query: 523 QRQATKDAGTISSLNVLRIINEPTAAAIAYG 615
           Q +A K A  +   N   II+EPT     YG
Sbjct: 353 QAEAEKHAAMLYQYNFNIIISEPTERISPYG 383


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +1

Query: 514 NDSQRQATKDAGTISSLNVLRIINEPTAAAIAYGLDKKGTG 636
           +D    AT   G +SSL V  +     +  + Y  D+KG G
Sbjct: 172 HDVAVNATTGKGRLSSLAVQSLDCNTNSDTMVYIADEKGEG 212


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +1

Query: 514 NDSQRQATKDAGTISSLNVLRIINEPTAAAIAYGLDKKGTG 636
           +D    AT   G +SSL V  +     +  + Y  D+KG G
Sbjct: 172 HDVAVNATTGKGRLSSLAVQSLDCNTNSDTMVYIADEKGEG 212


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +1

Query: 514 NDSQRQATKDAGTISSLNVLRIINEPTAAAIAYGLDKKGTG 636
           +D    AT   G +SSL V  +     +  + Y  D+KG G
Sbjct: 172 HDVAVNATTGKGRLSSLAVQSLDCNTNSDTMVYIADEKGEG 212


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 10/43 (23%), Positives = 19/43 (44%)
 Frame = +1

Query: 556 SSLNVLRIINEPTAAAIAYGLDKKGTGERNVLIFDLGGGTFDV 684
           ++LN+  I   P+     Y +      + N+L  DL  G  ++
Sbjct: 785 TTLNISDIALYPSQTTHGYDIYASSIDKENILFLDLSTGKVEM 827


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 489 SYHGSRVLQ*LSKTSHKRCRYHLKLERS 572
           SY   R  +   KTS +R R  ++ ERS
Sbjct: 271 SYKNEREYRKYGKTSKERSRDRMERERS 298


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
          finger domain-Z3 isoform protein.
          Length = 92

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -2

Query: 67 PFCIFNQSCYLFLKQ 23
          P+C  N SCY  LK+
Sbjct: 9  PYCRRNFSCYYSLKR 23


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,199
Number of Sequences: 438
Number of extensions: 4599
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)