Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0523
(739 letters)
Database: tribolium
336 sequences; 122,585 total letters
Searching.......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY769608-1|AAV40984.1| 195|Tribolium castaneum heat shock prote... 31 0.013
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad... 25 0.84
AM292340-1|CAL23152.1| 355|Tribolium castaneum gustatory recept... 25 0.84
AM292357-1|CAL23169.2| 355|Tribolium castaneum gustatory recept... 23 2.6
EF222293-1|ABN79653.1| 434|Tribolium castaneum ecdysis triggeri... 22 4.5
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept... 22 5.9
AM292324-1|CAL23136.1| 398|Tribolium castaneum gustatory recept... 22 5.9
U81040-1|AAB39356.1| 283|Tribolium castaneum TC Deformed protein. 21 7.9
U81038-1|AAB39355.1| 412|Tribolium castaneum transcription fact... 21 7.9
AF321227-3|AAK16423.1| 412|Tribolium castaneum Dfd protein. 21 7.9
>AY769608-1|AAV40984.1| 195|Tribolium castaneum heat shock protein
70 protein.
Length = 195
Score = 30.7 bits (66), Expect = 0.013
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 3/91 (3%)
Frame = +1
Query: 328 QLSVEFFRKSFEQMICKRAEIMNKCFQKYSEQRER--RDMK-YHKRKLQLQKDFHENDNL 498
Q +++F K +Q K K QK + E+ RD+ HK L ++ + D
Sbjct: 62 QKVMDYFIKMVKQKHKKDIRADKKALQKLRREVEKAKRDLSSVHKTTLTIENLLADYDFS 121
Query: 499 NVLKIAKLDEQNNSAMINRQTIDNMNRILEE 591
L AK +E NN + +T+ + ++LE+
Sbjct: 122 ETLTRAKFEELNNDQFL--KTLKPVKKVLED 150
>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
adhesion molecule splicevariant 3.12.3.1 protein.
Length = 1639
Score = 24.6 bits (51), Expect = 0.84
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +1
Query: 169 TIGPNSPAKKELIYEEKQIPAKI 237
TIG P+KK + +PAKI
Sbjct: 1287 TIGEGQPSKKVTVSPSASVPAKI 1309
>AM292340-1|CAL23152.1| 355|Tribolium castaneum gustatory receptor
candidate 19 protein.
Length = 355
Score = 24.6 bits (51), Expect = 0.84
Identities = 11/42 (26%), Positives = 23/42 (54%)
Frame = -3
Query: 650 MHILV*LSVIAANRAVALFCSSKILFILSIVCLLIIALLFCS 525
+H+L+ + + LFC + I+F + ++ LL I +C+
Sbjct: 250 VHLLLLVCIYYFYYMHLLFCCAFIIFTMHLLFLLCIYYFYCA 291
>AM292357-1|CAL23169.2| 355|Tribolium castaneum gustatory receptor
candidate 36 protein.
Length = 355
Score = 23.0 bits (47), Expect = 2.6
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -1
Query: 682 KLLRL*FHYNRCIF*YDCQLLPQIELWLYFVLLRFYSYCQLS 557
+L L +YN F + QL +I+ W Y +LL ++ S
Sbjct: 19 RLFALVPYYNFEKFSLEHQLWQKIQAWTYLILLTTWTVISAS 60
>EF222293-1|ABN79653.1| 434|Tribolium castaneum ecdysis triggering
hormone receptorisoform A protein.
Length = 434
Score = 22.2 bits (45), Expect = 4.5
Identities = 7/18 (38%), Positives = 14/18 (77%)
Frame = -3
Query: 581 ILFILSIVCLLIIALLFC 528
I+F+ I+ L+I+ +L+C
Sbjct: 241 IIFLFFIIPLIILLILYC 258
>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
candidate 46 protein.
Length = 1451
Score = 21.8 bits (44), Expect = 5.9
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = -1
Query: 508 LIHLNCHFHENPSVAVVSVYGISCLCAHVVRYTSESICSLF 386
LIH + EN +V + LC + RY + ++ LF
Sbjct: 110 LIHFDTKCQENSTVIDYKRHKKRLLCYLLARYVALALVILF 150
>AM292324-1|CAL23136.1| 398|Tribolium castaneum gustatory receptor
candidate 3 protein.
Length = 398
Score = 21.8 bits (44), Expect = 5.9
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = -1
Query: 508 LIHLNCHFHENPSVAVVSVYGISCLCAHVVRYTSESICSLF 386
LIH + EN +V + LC + RY + ++ LF
Sbjct: 128 LIHFDTKCQENSTVIDYKRHKKRLLCYLLARYVALALVILF 168
>U81040-1|AAB39356.1| 283|Tribolium castaneum TC Deformed protein.
Length = 283
Score = 21.4 bits (43), Expect = 7.9
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = +1
Query: 394 NKCFQKYSEQRERRDMKYHKRKLQLQKDFHEN 489
N F E + +R + L+L+K+FH N
Sbjct: 224 NGTFAPGMEPKRQRTAYTRHQILELEKEFHYN 255
>U81038-1|AAB39355.1| 412|Tribolium castaneum transcription factor
Deformed protein.
Length = 412
Score = 21.4 bits (43), Expect = 7.9
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = +1
Query: 394 NKCFQKYSEQRERRDMKYHKRKLQLQKDFHEN 489
N F E + +R + L+L+K+FH N
Sbjct: 224 NGTFAPGMEPKRQRTAYTRHQILELEKEFHYN 255
>AF321227-3|AAK16423.1| 412|Tribolium castaneum Dfd protein.
Length = 412
Score = 21.4 bits (43), Expect = 7.9
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = +1
Query: 394 NKCFQKYSEQRERRDMKYHKRKLQLQKDFHEN 489
N F E + +R + L+L+K+FH N
Sbjct: 224 NGTFAPGMEPKRQRTAYTRHQILELEKEFHYN 255
Database: tribolium
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 122,585
Number of sequences in database: 336
Lambda K H
0.316 0.131 0.363
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,625
Number of Sequences: 336
Number of extensions: 3725
Number of successful extensions: 13
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19779950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
- SilkBase 1999-2023 -