Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0523
(739 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 32 0.098
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 31 0.13
SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces pomb... 31 0.23
SPCP20C8.01c |||B13958 domain|Schizosaccharomyces pombe|chr 3|||... 31 0.23
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |... 28 1.6
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 27 3.7
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce... 27 3.7
SPAC694.06c |mrc1||mediator of replication checkpoint 1 |Schizos... 27 3.7
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc... 26 4.9
SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|ch... 26 4.9
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 26 4.9
SPBC13E7.08c |||RNA polymerase II associated Paf1 complex |Schiz... 26 6.4
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 31.9 bits (69), Expect = 0.098
Identities = 27/98 (27%), Positives = 47/98 (47%)
Frame = +1
Query: 4 SSYDSYNDRLGEILNRSITSKMRDSSIDETLAGFGKLRISALTKAVELSPLVKEATIGPN 183
SSY S DRL L+R +TS +R +SID +A L+ + + +++ L + E P+
Sbjct: 568 SSYTSLMDRLINNLSRGLTS-LRAASIDLIIALCKSLQKNEVLQSLSLVKKLSELPFDPS 626
Query: 184 SPAKKELIYEEKQIPAKIEPLPEDLVEDKLRGDLGYNL 297
+ ++ + + AK L +D L LG +
Sbjct: 627 TSRDASVLL--RNLSAKSSALEKDTRRVVLHALLGLTI 662
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 31.5 bits (68), Expect = 0.13
Identities = 47/190 (24%), Positives = 89/190 (46%), Gaps = 9/190 (4%)
Frame = +1
Query: 49 RSITSKMRDSSIDETLAGFGKLRISALTKA-VELSPLVKEATIGPNSPAKKELIYEEKQI 225
R I SK RD D+ L F + A TK +K+ +G + A L++ K
Sbjct: 405 RKIVSKDRDL-YDKGLRAFVS-HVRAYTKHHASFIFRIKDLDLGQLATAYA-LLHLPKMP 461
Query: 226 PAKIEPLPEDLVE--DKLRGDLGYNLIMKECEAQLHQLSVEFFRKSFEQMICKRAEIMNK 399
K + E++ + D + Y ++E +A+ +L VE K+ + + + A+I N+
Sbjct: 462 ELKDTEISENIFKKFDIDYATIPYRDQVRE-QARRRRLEVE---KTEPKKLARPAKIKNE 517
Query: 400 CFQKYSEQRERRDMKYHKRK-----LQLQKDFHEND-NLNVLKIAKLDEQNNSAMINRQT 561
+ K E +E+R+ + KRK L+ QK+ N+ ++ A E N +I+ ++
Sbjct: 518 AWSKQKEVKEKRNTRREKRKSKKEFLKAQKNEASNNLKQEIVSKAGAQETENDDLIDEES 577
Query: 562 IDNMNRILEE 591
D ++ + E+
Sbjct: 578 -DALSELEED 586
>SPCC569.01c |||DUF1773 family protein 5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 323
Score = 30.7 bits (66), Expect = 0.23
Identities = 32/144 (22%), Positives = 68/144 (47%), Gaps = 12/144 (8%)
Frame = +1
Query: 280 DLGYNLIMKECEAQLHQLSVEFFRKSFEQMICKRAEIMNKCFQKYSEQRERRDMKYH--- 450
D YNL A+ ++ ++ + +S + + + E + +KY E+R+R+ MKY
Sbjct: 8 DNDYNLPPPNDSAEDLKIFIKRYERSVDSTLLEIDENKREALEKYIEERDRK-MKYEIEC 66
Query: 451 ------KRKLQLQKDFHENDNLNVLKIAKLDEQNNSAM--INRQTIDNMNRILEEQNKAT 606
+KL ++++ E + V +DE N+ + I + M+ + QN
Sbjct: 67 NERLQGWKKLAIEREISEEQSGEVQFPRWIDEWANTKLGGIFERIFSKMDSM---QNDMN 123
Query: 607 ARFAAI-TDSHTKICICYNEITNV 675
+RF A+ + +++ NE+T++
Sbjct: 124 SRFDAMQNEMNSRFDAVQNEMTSM 147
>SPCP20C8.01c |||B13958 domain|Schizosaccharomyces pombe|chr
3|||Manual
Length = 247
Score = 30.7 bits (66), Expect = 0.23
Identities = 32/144 (22%), Positives = 68/144 (47%), Gaps = 12/144 (8%)
Frame = +1
Query: 280 DLGYNLIMKECEAQLHQLSVEFFRKSFEQMICKRAEIMNKCFQKYSEQRERRDMKYH--- 450
D YNL A+ ++ ++ + +S + + + E + +KY E+R+R+ MKY
Sbjct: 8 DNDYNLPPPNDSAEDLKIFIKRYERSVDSTLLEIDENKREALEKYIEERDRK-MKYEIEC 66
Query: 451 ------KRKLQLQKDFHENDNLNVLKIAKLDEQNNSAM--INRQTIDNMNRILEEQNKAT 606
+KL ++++ E + V +DE N+ + I + M+ + QN
Sbjct: 67 NERLQGWKKLAIEREISEEQSGEVQFPRWIDEWANTKLGGIFERIFSKMDSM---QNDMN 123
Query: 607 ARFAAI-TDSHTKICICYNEITNV 675
+RF A+ + +++ NE+T++
Sbjct: 124 SRFDAMQNEMNSRFDTVQNEMTSM 147
>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 649
Score = 27.9 bits (59), Expect = 1.6
Identities = 21/86 (24%), Positives = 40/86 (46%), Gaps = 1/86 (1%)
Frame = +1
Query: 181 NSPAKKELIYEE-KQIPAKIEPLPEDLVEDKLRGDLGYNLIMKECEAQLHQLSVEFFRKS 357
NS A + + EE +I + P D+ E+K + +L + Q Q + ++
Sbjct: 4 NSGASESISIEETNRIRISLGLKPLDISEEKPQKELSDASVKSSYVDQEQQAYENWKKQE 63
Query: 358 FEQMICKRAEIMNKCFQKYSEQRERR 435
E++ K+ E + F+K ++ ERR
Sbjct: 64 QEEINRKKEEELKSKFEKLRQKNERR 89
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 26.6 bits (56), Expect = 3.7
Identities = 51/253 (20%), Positives = 104/253 (41%), Gaps = 13/253 (5%)
Frame = +1
Query: 16 SYNDRLGEILNRSI--TSKMRDSSID-ETLAGFGKLRISALTKAVELSPLVKEATIGPNS 186
S N L +I++R SK + + +LA K ++A +L +E I N
Sbjct: 717 SINQNLQDIISRQDQRASKFAEELLHVNSLAERLKGELNASKGEKDLRKRTQERLISEND 776
Query: 187 PAKKELIYEEKQIPAKIEPLPEDLVEDKLRGDLGYNLIMKECEAQLHQLSVEFFRKSFEQ 366
+L+ E +++ + + L L + +L + E E + LS++ ++S E+
Sbjct: 777 ----KLLAERERLMSLVSDLQTFLNQQQLSD--AARKVKFESEKESLSLSLQKLKESNEK 830
Query: 367 MICKRAEIMNKCFQKYSEQRERRDMKYHKRKLQLQKDFHEN-DNLNVLKIAKLDEQNNSA 543
M + K +K + R K L +D + DN +++I KL E N
Sbjct: 831 M-SNDLHSLQKSLEKSGIEYSSRIKTLMLEKQSLSEDNRKLLDNQQMMEI-KLQELNGVI 888
Query: 544 MINRQTIDNMN-RILEEQNKATARFAAITDS--------HTKICICYNEITNVIASEPLS 696
+ +Q + + +++N + + A+ +S HT + YN I +
Sbjct: 889 ELEKQRFSTLEAKFTQQKNTSYSEREALLESSLSDLQSKHTSLESQYNYSLRNIEQLQAA 948
Query: 697 QQVCDKYIPTIKT 735
++ ++ + +KT
Sbjct: 949 SKLAEEMVERVKT 961
>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1210
Score = 26.6 bits (56), Expect = 3.7
Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Frame = +1
Query: 1 DSSYDSYNDRLGEILNRSITSKMRDSSID---ETLAGFGKLRISALTKAVELSPLVKEAT 171
++ +++ N +G + SI S MR D E L GF L S ++V LSP+
Sbjct: 140 ENIFNAPNIIIGPRSDFSINSVMRSILCDITAELLEGFSSLEFSIHARSVILSPITDMPH 199
Query: 172 IGP 180
+ P
Sbjct: 200 LAP 202
>SPAC694.06c |mrc1||mediator of replication checkpoint 1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1019
Score = 26.6 bits (56), Expect = 3.7
Identities = 29/121 (23%), Positives = 50/121 (41%)
Frame = +1
Query: 340 EFFRKSFEQMICKRAEIMNKCFQKYSEQRERRDMKYHKRKLQLQKDFHENDNLNVLKIAK 519
EF KSF + + KRA +M K Q+ + E + +K +Q +K+ E+ A+
Sbjct: 404 EFNIKSFNRNLVKRAAVMAK-LQRNQLEEELKAKGIYKPTIQGEKEEEEDPLERARNDAE 462
Query: 520 LDEQNNSAMINRQTIDNMNRILEEQNKATARFAAITDSHTKICICYNEITNVIASEPLSQ 699
Q A N +N EE+ +++ + T I + I +EP +
Sbjct: 463 KIRQLEKASGNASDEGELND--EEEVISSSNTPSTKAKTTNKVIISDVIIEATQAEPKRR 520
Query: 700 Q 702
Q
Sbjct: 521 Q 521
>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
Thi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 775
Score = 26.2 bits (55), Expect = 4.9
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = +1
Query: 451 KRKLQLQKDFHENDNLNVLKIAKL-DEQNNSAMINRQTIDN-MNRILEEQNKATARFA 618
K + + K EN+NL V KIA++ +E + IN Q N ++ EE +++ A
Sbjct: 107 KNLISISKKLSENENLPVSKIAEVTNELDTLVRINDQLSRNHISGTTEEMQSSSSLIA 164
>SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 775
Score = 26.2 bits (55), Expect = 4.9
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = -3
Query: 137 ALVRADILNLPNPAKVSSILESLI 66
ALV+ D+ L N +K+S++LES I
Sbjct: 536 ALVKDDVETLCNSSKISALLESSI 559
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 26.2 bits (55), Expect = 4.9
Identities = 30/123 (24%), Positives = 51/123 (41%)
Frame = +1
Query: 232 KIEPLPEDLVEDKLRGDLGYNLIMKECEAQLHQLSVEFFRKSFEQMICKRAEIMNKCFQK 411
+I+ L DL ++K N IM E EA + L+ + ++ + K E + +
Sbjct: 360 RIQVLTADLEKEK------ENQIMHESEASIG-LTDSMQVHTLQEQLHKANEEIEFLHDQ 412
Query: 412 YSEQRERRDMKYHKRKLQLQKDFHENDNLNVLKIAKLDEQNNSAMINRQTIDNMNRILEE 591
S E + LQ + E D L K+ L++ NNS + ++ N L
Sbjct: 413 ISRMNEE-GKNFEDIMLQFRSLEEERDVLES-KLQTLEDDNNSLRLMTSSLGNQIESLRT 470
Query: 592 QNK 600
QN+
Sbjct: 471 QNR 473
>SPBC13E7.08c |||RNA polymerase II associated Paf1 complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 429
Score = 25.8 bits (54), Expect = 6.4
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 361 EQMICKRAEIMNKCFQKYSEQRERRDMKYHKRK 459
E +I K E++ + +KY E+R R + KRK
Sbjct: 236 EIIIEKDPELLKRQAEKYEEERSRARRRLEKRK 268
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.131 0.363
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,873,894
Number of Sequences: 5004
Number of extensions: 58964
Number of successful extensions: 214
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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