Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0523
(739 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_01_0301 + 4016588-4016627,4016715-4018837 44 2e-04
04_01_0308 + 4188726-4190351 33 0.18
03_02_0300 - 7246312-7246662,7246757-7246831,7246920-7246993,724... 32 0.55
01_01_0893 + 7043130-7043182,7043309-7043335,7043461-7043560,704... 31 1.3
01_01_0192 - 1672837-1673181,1673255-1673485,1673854-1674099,167... 31 1.3
04_01_0290 + 3843610-3843712,3844088-3846003 30 1.7
01_07_0214 - 42055848-42056155,42056263-42056442,42056560-420570... 30 2.2
01_06_0753 - 31711300-31713066 30 2.2
09_06_0349 + 22457820-22457987,22458202-22458246,22458597-224586... 29 2.9
07_03_1479 - 26832976-26833095,26833737-26833943,26834104-268342... 29 3.9
01_06_0708 + 31363851-31364063,31364314-31364439,31364646-31365755 28 6.7
08_02_1553 + 27835320-27835364,27836853-27836966,27837062-278374... 28 8.9
07_01_0459 - 3478756-3478923,3479027-3479092,3479200-3479280,347... 28 8.9
01_06_0899 + 32837027-32837215,32837366-32837547,32839056-328391... 28 8.9
>04_01_0301 + 4016588-4016627,4016715-4018837
Length = 720
Score = 43.6 bits (98), Expect = 2e-04
Identities = 49/203 (24%), Positives = 94/203 (46%), Gaps = 14/203 (6%)
Frame = +1
Query: 46 NRSITSKMRDSSIDETLA-----GFGKLRISALTKAVELSPLVKEATIGPNSPAKKELIY 210
N+ + D E LA G + ++ L + + + K+A K E++
Sbjct: 351 NKDLVEGENDKLQSEVLAIEEKYGQSEAKVKWLNQILRVVVEAKDAAAKACEAEKVEILK 410
Query: 211 EEKQIPAKIEPL--PEDLVE---DKLRGDLGYNLIMKECEAQLHQLSVEFFRKSFEQMIC 375
E + ++E + +DLVE D LR D+ L K + ++ S++ ++FE+
Sbjct: 411 ESGNLKRRVEEILVNKDLVESENDVLRSDI-LTLKQKYNQFEVEVKSLKNELEAFEE--- 466
Query: 376 KRAEIMNKCF--QKYSEQRERRDMKYHKRKLQLQKDFHENDNLNVLK--IAKLDEQNNSA 543
E+ K F +K +E D+K ++Q +KD E++N NVL+ I ++ N
Sbjct: 467 -EKEVTAKAFNVEKTEILKELEDLKMKVLEIQAKKDLVESEN-NVLQLDIVTTKQKYNQF 524
Query: 544 MINRQTIDNMNRILEEQNKATAR 612
+ +++ N + LEE+ + TA+
Sbjct: 525 EVEIKSLKNELKALEEEKEVTAK 547
>04_01_0308 + 4188726-4190351
Length = 541
Score = 33.5 bits (73), Expect = 0.18
Identities = 39/171 (22%), Positives = 76/171 (44%), Gaps = 6/171 (3%)
Frame = +1
Query: 118 ISALTKAVELSPLVKEATIGPNSPAKKELIYEEKQIPAKIE--PLPEDLVE---DKLRGD 282
I L + +E++ VKEA K+E++ + + KIE +DLVE DKLR
Sbjct: 221 IKCLKQILEVAMEVKEAAAESFDAEKEEIMKQSNNLKRKIEENQASKDLVESENDKLRSK 280
Query: 283 LGYNLIMKECEAQLHQLSVEFFRKSFEQMICKRAEIMNKCFQKYSEQRERRDMKYHKRKL 462
+ + K + + S++ + ++ K A +K +E D K ++
Sbjct: 281 M-VTVKQKHNQFEADNKSLKIELGALKE--AKEATAKAFDVEKAGILKELEDPKRKVEEI 337
Query: 463 QLQKDFHENDNLNV-LKIAKLDEQNNSAMINRQTIDNMNRILEEQNKATAR 612
Q +KD E +N L++ +++ + + +++ L E +ATA+
Sbjct: 338 QAKKDLVERENDKFQLEVLTGEQKQSKSKAKAKSLKVELSALVEAKEATAK 388
>03_02_0300 -
7246312-7246662,7246757-7246831,7246920-7246993,
7247247-7247334,7247464-7247615,7247702-7247861,
7247940-7248095,7248181-7248396,7248808-7249065,
7249816-7250019,7251334-7251423
Length = 607
Score = 31.9 bits (69), Expect = 0.55
Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Frame = +1
Query: 82 IDETLAGFGKLRISALTKAVELSPLVKEATIGPNSPA-KKELIYEEKQIPAKIEPLPEDL 258
+D A +LR S + K EL LV A+IG +P K + K+ AK+ PL EDL
Sbjct: 62 VDSANAERSQLRQSLMAKEAELKVLV--ASIGEITPKFKVDEKQSLKEQLAKVTPLLEDL 119
Query: 259 VEDKLRGDLGYNLIMKECEAQLHQLS 336
K ++L+ + E Q+S
Sbjct: 120 RSKKEERIKQFSLVQSQIEKIKAQIS 145
>01_01_0893 +
7043130-7043182,7043309-7043335,7043461-7043560,
7045110-7045256,7045342-7045422,7045509-7045654,
7046030-7046099
Length = 207
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = +3
Query: 381 GGNNEQMLSEV*RTT*AQRHEIP*TETTATEGFS*K*QFKCIKNSQIR 524
GGN+ + + + A + IP ET+A EGF+ + F+CI + I+
Sbjct: 131 GGNSRTVSEKKAKAWCASKGNIPYFETSAKEGFNVEAAFECIARNAIK 178
>01_01_0192 -
1672837-1673181,1673255-1673485,1673854-1674099,
1674247-1674362,1675735-1675891
Length = 364
Score = 30.7 bits (66), Expect = 1.3
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = +1
Query: 376 KRAEIMNKCFQKYSEQRERRDMKYHKRKLQLQKDFHENDNLNVLKIAKLDE 528
++ ++ F S + R+ KY+K++ L KDF E + +N +I LD+
Sbjct: 38 RKPPFFSRIFPAGSHGKHRKIAKYYKKQENLLKDFSEMETMN--EIGSLDQ 86
>04_01_0290 + 3843610-3843712,3844088-3846003
Length = 672
Score = 30.3 bits (65), Expect = 1.7
Identities = 36/152 (23%), Positives = 66/152 (43%), Gaps = 8/152 (5%)
Frame = +1
Query: 109 KLRISALTKAVELSPLVKEATIGPNSPAKKELIYEEKQIPAKIEPLP--EDLVE---DKL 273
++ +++L K + KE T K E++ E + + K+ + +DLVE DKL
Sbjct: 342 EVEVTSLKKELGALEEAKEITTKAFEVEKTEILKELEDLKRKVVEIQTNKDLVEVGNDKL 401
Query: 274 RGD-LGYNLIMKECEAQLHQLSVEFFRKSFEQMICKRAEIMNKCF--QKYSEQRERRDMK 444
R D L E + + L +E + + E+ K F +K +E D+K
Sbjct: 402 RLDVLSAQQKQSILEVEANNLKMEL------GALVEAKEVATKAFDAEKAKITKELEDVK 455
Query: 445 YHKRKLQLQKDFHENDNLNVLKIAKLDEQNNS 540
++Q++KD E + + + EQ +S
Sbjct: 456 RKMEEIQVKKDLVEGEKDKLRLEILIAEQKHS 487
>01_07_0214 -
42055848-42056155,42056263-42056442,42056560-42057077,
42059507-42060063
Length = 520
Score = 29.9 bits (64), Expect = 2.2
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = +1
Query: 115 RISALTKAVELSPLVKEATI--GPNSPAKKELIYEEKQIPAKIEPLPEDLVEDKL 273
R+ A+ +SP + + T+ GPN YE IPA ++ L DL +D L
Sbjct: 340 RLGVRVPAIVISPWINKGTVVHGPNGSPTATSEYEHSSIPATVKKL-FDLPQDFL 393
>01_06_0753 - 31711300-31713066
Length = 588
Score = 29.9 bits (64), Expect = 2.2
Identities = 19/96 (19%), Positives = 43/96 (44%)
Frame = +1
Query: 385 EIMNKCFQKYSEQRERRDMKYHKRKLQLQKDFHENDNLNVLKIAKLDEQNNSAMINRQTI 564
E+M Q+Y + E Y + + ++ ++ + +L V+ IA EQ + Q +
Sbjct: 476 ELMRLTIQQYRKLFENTSAAYLEYRNRMSREEGDGSSLEVIGIADETEQ----FVRMQQL 531
Query: 565 DNMNRILEEQNKATARFAAITDSHTKICICYNEITN 672
D R+ + Q +++ + T++ C ++N
Sbjct: 532 DIYQRLNKFQKLWLTKYSDLVGHLTRVAECMTYLSN 567
>09_06_0349 +
22457820-22457987,22458202-22458246,22458597-22458650,
22458742-22458846,22458932-22459138,22459217-22459302,
22459423-22460330,22460566-22460624
Length = 543
Score = 29.5 bits (63), Expect = 2.9
Identities = 15/36 (41%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Frame = +1
Query: 397 KCFQKY-SEQRERRDMKYHKRKLQLQKDFHEN-DNL 498
KC +++ S RR + H+R LQ++KDF +N DN+
Sbjct: 30 KCPREFCSSINYRRHTRVHRRTLQIEKDFLKNRDNI 65
>07_03_1479 - 26832976-26833095,26833737-26833943,26834104-26834252,
26834330-26834732,26834840-26835118,26835285-26835716,
26836362-26836838,26837171-26837212,26837285-26837545,
26837637-26838938,26839146-26839575,26839643-26840046,
26840360-26840716,26840842-26841102,26841494-26842141,
26842231-26842452,26842547-26842768,26842860-26843009,
26843739-26844111,26844467-26844689,26845167-26845425,
26845585-26845920,26846013-26846999,26848395-26849624,
26849706-26849768,26849858-26849910,26849998-26850079,
26850520-26850588,26851070-26851129,26851205-26851267,
26851993-26852101,26852742-26852827,26853120-26853847,
26854613-26854676
Length = 3716
Score = 29.1 bits (62), Expect = 3.9
Identities = 31/127 (24%), Positives = 57/127 (44%), Gaps = 2/127 (1%)
Frame = +1
Query: 352 KSFEQMICKRAEIMNKCFQKYSEQRERRDMKYHKRKLQLQKDFHE-NDNLNVLKIAKLDE 528
+S E+M+ + ++NK F K+ E R+R + + + D+L ++ E
Sbjct: 3384 RSDERML-QLFRVLNKMFDKHKESRQRHLAIHTPIIIPVWSQVRMVEDDLMYSTFLEVYE 3442
Query: 529 QNNSAMINRQTIDNMNRILEEQNKATARFAAITDSHTKICI-CYNEITNVIASEPLSQQV 705
N A NR+ D+ I +EQ ++ ++ + YNEIT I ++ + Q
Sbjct: 3443 IN-CARHNREA-DSPITIFKEQLNQAISGQVSPEAVVELRLQAYNEITKNIVNDNIFSQY 3500
Query: 706 CDKYIPT 726
K +PT
Sbjct: 3501 MHKILPT 3507
>01_06_0708 + 31363851-31364063,31364314-31364439,31364646-31365755
Length = 482
Score = 28.3 bits (60), Expect = 6.7
Identities = 35/129 (27%), Positives = 54/129 (41%), Gaps = 4/129 (3%)
Frame = +1
Query: 211 EEKQIPAKIEPLPEDLVEDKLRGDLGYNLIMK-ECEAQLHQLSVEFFRKSFEQ--MICKR 381
E K +IE L D L +L N + K E ++ L + F +Q +I
Sbjct: 164 ERKDYEEEIERLKSD--NAALSSELQNNTLKKLNMEKRMQALEEKLFVVEDQQRSLISYV 221
Query: 382 AEIMNKCFQKYSEQRERRDMKYHKRKLQLQKDFHENDNLNVLKIAKLDEQNNSAM-INRQ 558
EI+ K S +++D KR+L + FHE+ N +I D N+ A R+
Sbjct: 222 REIV-KAPGFLSSFVQQQDHHRKKRRLPIPISFHEDANTQENQIMPCDLTNSPAQTFYRE 280
Query: 559 TIDNMNRIL 585
+ D M L
Sbjct: 281 SFDKMESSL 289
>08_02_1553 +
27835320-27835364,27836853-27836966,27837062-27837457,
27837751-27837822,27837957-27838082,27838164-27838244,
27838364-27838558,27839018-27840013
Length = 674
Score = 27.9 bits (59), Expect = 8.9
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -2
Query: 456 PFMVFHVSALTLFAILLKAFVHYFRPF 376
P F + A+T+F +L+ AF +F PF
Sbjct: 10 PAHTFQIIAITVFFLLVVAFYAFFAPF 36
>07_01_0459 -
3478756-3478923,3479027-3479092,3479200-3479280,
3479402-3479479,3479625-3479711,3480127-3480223,
3480266-3480339,3480687-3480775,3480878-3480926,
3481090-3481146,3481256-3481357,3482365-3482382
Length = 321
Score = 27.9 bits (59), Expect = 8.9
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Frame = +1
Query: 355 SFEQMICKRAEIMNKCFQKYSEQR---ERRDMKYHKRKLQLQKDFHENDNLNVLKIAKLD 525
+ E +I K +++K E + + RDMK K++++ KD E + + K+D
Sbjct: 43 AIESLIAKLTNLLHKLQTANEESKAVTKARDMKAIKQRME--KDIDEVGKIARMAKTKVD 100
Query: 526 EQNNSAMINRQ 558
E + NRQ
Sbjct: 101 ELEKDNLSNRQ 111
>01_06_0899 +
32837027-32837215,32837366-32837547,32839056-32839102,
32839426-32839500,32839595-32839726,32839800-32839972,
32840005-32840277,32840386-32840519,32840640-32840726,
32840834-32840948
Length = 468
Score = 27.9 bits (59), Expect = 8.9
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -1
Query: 496 NCHFHENPSVAVVSVYGISCLCAHVVRYTSESIC 395
+C+ H N VA+VSV LC + + ES+C
Sbjct: 283 HCNLHYN--VAIVSVKDFRALCPANLHHEQESVC 314
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.316 0.131 0.363
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,162,767
Number of Sequences: 37544
Number of extensions: 328699
Number of successful extensions: 913
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 890
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 911
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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