Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0523
(739 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.) 41 0.001
SB_43903| Best HMM Match : FHA (HMM E-Value=4.6e-13) 38 0.008
SB_34623| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.10
SB_54020| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.56
SB_56568| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.74
SB_42146| Best HMM Match : GYF (HMM E-Value=5.7e-15) 31 0.97
SB_11234| Best HMM Match : DSPc (HMM E-Value=2.4e-29) 31 0.97
SB_8533| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.97
SB_16100| Best HMM Match : Ank (HMM E-Value=1.4e-14) 31 1.3
SB_40923| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.29) 31 1.3
SB_8951| Best HMM Match : Mito_carr (HMM E-Value=0) 31 1.3
SB_5831| Best HMM Match : TolA (HMM E-Value=0.0037) 30 1.7
SB_21896| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_30332| Best HMM Match : RVT_1 (HMM E-Value=2.7e-34) 29 3.9
SB_55370| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_41528| Best HMM Match : DUF1126 (HMM E-Value=2.7) 29 3.9
SB_20734| Best HMM Match : Abi_HHR (HMM E-Value=3.59994e-42) 29 3.9
SB_56062| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.2
SB_33744| Best HMM Match : SMC_N (HMM E-Value=0) 29 5.2
SB_7462| Best HMM Match : PspA_IM30 (HMM E-Value=0.15) 29 5.2
SB_23193| Best HMM Match : Lipoprotein_17 (HMM E-Value=2.3) 29 5.2
SB_16461| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.2
SB_2516| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.2
SB_38786| Best HMM Match : HLH (HMM E-Value=1e-13) 28 6.9
SB_28699| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_3063| Best HMM Match : Lig_chan (HMM E-Value=5.4e-13) 28 6.9
SB_59222| Best HMM Match : Filament (HMM E-Value=0.95) 28 9.1
SB_49770| Best HMM Match : SURF6 (HMM E-Value=0.92) 28 9.1
SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
SB_16545| Best HMM Match : Cullin (HMM E-Value=0) 28 9.1
>SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2193
Score = 41.1 bits (92), Expect = 0.001
Identities = 55/246 (22%), Positives = 109/246 (44%), Gaps = 12/246 (4%)
Frame = +1
Query: 28 RLGEILNRSITSKMRDSSIDETLAGFGKLRISALTKAVELSPLVKEATIGPNS------- 186
+L E LN + +MR S ++ + GKL +L +KEA S
Sbjct: 193 KLKEELNNA---EMRASQQEKANSSLGKLVKKHENTIADLMQQLKEAEADVESLRRELVS 249
Query: 187 -PAKKELIYEEKQ-IPAKIEPLPEDLVEDKLRGDLGYNLIMKECEAQLHQLSVEFFRKSF 360
AK +L+ +EK+ + KI L + + E +L N + E EA ++ ++ S
Sbjct: 250 VNAKNDLLNQEKKDLVKKINDLKKRITELELI----INTLKDEKEALEQDVNSMSYKISN 305
Query: 361 EQMICKRAEIMNKCFQKYSEQRERRDMKYHKRKLQLQKDFHENDNL--NVLKIAK-LDEQ 531
+ K E +QK SE+ E ++ + LQLQ + + + N+ AK L+
Sbjct: 306 LETKVKNLEKEKAFYQKESEELEAKNRRMKNEILQLQNQLKDKERMCENLAAEAKQLEAS 365
Query: 532 NNSAMINRQTIDNMNRILEEQNKATARFAAITDSHTKICICYNEITNVIASEPLSQQVCD 711
NN+ +++ +++ +L+ Q +++ ++ + + E ++ + P+S V +
Sbjct: 366 NNALKRDKKALEDEINLLKMQLESSKHANEVSQERIRELLAQLERASMQVAAPVSVSVVE 425
Query: 712 KYIPTI 729
PT+
Sbjct: 426 S-APTM 430
>SB_43903| Best HMM Match : FHA (HMM E-Value=4.6e-13)
Length = 553
Score = 37.9 bits (84), Expect = 0.008
Identities = 32/134 (23%), Positives = 64/134 (47%), Gaps = 1/134 (0%)
Frame = +1
Query: 124 ALTKAVELSPLVKEATIGPNSPAKKELIYEEKQIPAKIEPLPEDLVEDKLRGDLGYNLIM 303
+L + +E SP KE + +KEL+ +EK VE+KL+ +L L +
Sbjct: 223 SLKELLEKSPKEKEEMLSEELETQKELLIKEKH-----------KVEEKLQNELNQKLEL 271
Query: 304 KECEAQLHQLSVEFFRKSFEQMICKRAEIMNKCFQKYSEQRE-RRDMKYHKRKLQLQKDF 480
K+ E + E+++ ++A++ +K ++Q+E ++++ HK + KD
Sbjct: 272 KDKELE-------------EKLLAQKADLEKVIAEKEAQQKELQQELSIHKSATEKLKDL 318
Query: 481 HENDNLNVLKIAKL 522
EN+ V + +L
Sbjct: 319 EENEKRLVTSVQEL 332
>SB_34623| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 553
Score = 34.3 bits (75), Expect = 0.10
Identities = 23/98 (23%), Positives = 42/98 (42%)
Frame = +1
Query: 286 GYNLIMKECEAQLHQLSVEFFRKSFEQMICKRAEIMNKCFQKYSEQRERRDMKYHKRKLQ 465
GY + QL +L VEF KS E + K A+ M ++ Q+ + +Y K +
Sbjct: 145 GYKQAFNDKSEQLSRLQVEFDAKSTE-LANKHAQEMTAEKERILHQKSKTQQQYEKERRD 203
Query: 466 LQKDFHENDNLNVLKIAKLDEQNNSAMINRQTIDNMNR 579
L++ ++ K++ QN +Q + + R
Sbjct: 204 LEQAHRHTVKQLESRLDKVENQNKEYGHMKQELKTLRR 241
>SB_54020| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2431
Score = 31.9 bits (69), Expect = 0.56
Identities = 16/51 (31%), Positives = 30/51 (58%)
Frame = +1
Query: 112 LRISALTKAVELSPLVKEATIGPNSPAKKELIYEEKQIPAKIEPLPEDLVE 264
+R AL+ ++SP++ + P P +KE + E K++ EPL +DL++
Sbjct: 1546 MRAIALSLGQDISPMIVDQ---PPPPPQKEPLKEPKELTEDEEPLAKDLID 1593
>SB_56568| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 397
Score = 31.5 bits (68), Expect = 0.74
Identities = 31/147 (21%), Positives = 69/147 (46%), Gaps = 2/147 (1%)
Frame = +1
Query: 190 AKKELIYEEKQIPAKIEPLPEDLVED-KLRGDLGYNLIMKECEAQLHQLSVEFFRKSFEQ 366
A KE +EK K+E E L + K + DL + + E E + + ++ KS+ +
Sbjct: 55 ATKEKDLKEKM--RKLEKNNERLANEVKSKNDLLVKVALLETERKRLEEELKTKEKSYSK 112
Query: 367 MICKRAEIMNKCFQKYSEQRERRDMKYHKRKLQLQKDFHE-NDNLNVLKIAKLDEQNNSA 543
+ K + +K + + E + +Y + + L K+ E + L LKI+K + +
Sbjct: 113 IEDKCRSMKDKL--GHYDDLEDKVYRYERERKSLTKENKELKEELEDLKISKNELEEKKL 170
Query: 544 MINRQTIDNMNRILEEQNKATARFAAI 624
+ ++ + + +E+N+A ++ ++
Sbjct: 171 GLEKKKTSEIEDLEKERNEAEKKYNSL 197
>SB_42146| Best HMM Match : GYF (HMM E-Value=5.7e-15)
Length = 924
Score = 31.1 bits (67), Expect = 0.97
Identities = 23/102 (22%), Positives = 48/102 (47%), Gaps = 7/102 (6%)
Frame = +1
Query: 328 QLSVEFFRKSFEQMICKRAEIMNKCFQKYSEQRERRD-------MKYHKRKLQLQKDFHE 486
Q E R+ EQM+ ++ E + Q+ +R+RR+ + +++L+LQK E
Sbjct: 615 QREEEEMRRQQEQMLQRQREEEERRRQQEEAERQRREQEEVFKQQEQQRQQLELQKRQQE 674
Query: 487 NDNLNVLKIAKLDEQNNSAMINRQTIDNMNRILEEQNKATAR 612
L+ + +E+ A + +Q + R+ ++Q + R
Sbjct: 675 QQRQQELQKRQQEEKQRMAEMRQQQQQALLRLQQQQQEVQRR 716
>SB_11234| Best HMM Match : DSPc (HMM E-Value=2.4e-29)
Length = 2072
Score = 31.1 bits (67), Expect = 0.97
Identities = 35/184 (19%), Positives = 77/184 (41%), Gaps = 7/184 (3%)
Frame = +1
Query: 61 SKMRDSSIDETLAGFGKLRISALTKAVELSPLVKEATIGPNSPAKKELIYEEKQIPAKIE 240
+K D+ + + + ++ ++K L ++E+ + EKQ ++E
Sbjct: 1055 TKEMDTKLKKLTSEKNSIKAEYVSKIARLQSELEESNQRSRLDIENVRTEMEKQRLCEVE 1114
Query: 241 PLPEDLVEDKLRGDLGYNLIMKECEAQLHQLSVEFFRKSFEQMICK-----RAEIMNKCF 405
+ +++ D I+KEC+ ++ L+ + + + I + + E M +
Sbjct: 1115 KVRNEMLSDLEETRAKLQRIVKECDERISILTQNYEAQILQLTIDRDNIEAKLEAMTRRE 1174
Query: 406 QKYSEQRERR--DMKYHKRKLQLQKDFHENDNLNVLKIAKLDEQNNSAMINRQTIDNMNR 579
Q SE+ E+ D+K + + QL + E + L +E I +TI+ N+
Sbjct: 1175 QLASEEFEKNILDVK-EQYEAQLARVKKERNKLKQKYEELTEEDEEEDAIYEETIEKQNK 1233
Query: 580 ILEE 591
L+E
Sbjct: 1234 RLQE 1237
Score = 28.7 bits (61), Expect = 5.2
Identities = 38/174 (21%), Positives = 77/174 (44%), Gaps = 9/174 (5%)
Frame = +1
Query: 181 NSPAKKELIYEEKQIPAKIEPLPEDLV---EDKLRGDLG-YNLIMKECEAQLHQLSVEFF 348
N+ AK Y++++ K+E L E + +K + +LG MKE + Q
Sbjct: 817 NTRAKLRESYDKRE--DKMEDLMESEITELREKHQQELGEMEERMKELQKQHDAEQASIK 874
Query: 349 RKSFEQMICKRAEIMNKCFQKYSEQRERRDMKYHKRKLQLQKDFHENDNLNVLKIAKLDE 528
+K +++ ++ + ++ + E+ K H++ Q++ +E N + K +DE
Sbjct: 875 KKWADELASQQNKWQDRV--RVLEKEADGQRKVHEK----QQNSYEKRNEGLEK-KLMDE 927
Query: 529 QNNSAMINRQTIDNMNRILEEQNKATARF-----AAITDSHTKICICYNEITNV 675
N I + D + ++EEQ + ++ + DS T+I N+ NV
Sbjct: 928 ANERTKIKAKYNDEIQTLIEEQRELVRKYESQIKTVVEDSKTRILKLINDHENV 981
>SB_8533| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 335
Score = 31.1 bits (67), Expect = 0.97
Identities = 19/63 (30%), Positives = 31/63 (49%)
Frame = +1
Query: 433 RDMKYHKRKLQLQKDFHENDNLNVLKIAKLDEQNNSAMINRQTIDNMNRILEEQNKATAR 612
RD KY+K+ + D + N NLN KIA + +A+ + T NR ++ + R
Sbjct: 187 RDDKYNKKVFKHLNDINRNPNLN--KIAPATQSAETALSTQSTDQCTNRSVKFNTNESNR 244
Query: 613 FAA 621
+A
Sbjct: 245 ISA 247
>SB_16100| Best HMM Match : Ank (HMM E-Value=1.4e-14)
Length = 189
Score = 30.7 bits (66), Expect = 1.3
Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 5/93 (5%)
Frame = +1
Query: 451 KRKLQLQKDFHENDNLNVLKIAKLDEQNNSAMINRQTIDNMNRI-----LEEQNKATARF 615
+R+ + K + +D K LD+ +R T +NM I L++ NK A
Sbjct: 4 RRRRKKCKAYTLDDTEKKRKACTLDDAKRHLKYSRYTPNNMQSIQKTITLKDVNKRRANH 63
Query: 616 AAITDSHTKICICYNEITNVIASEPLSQQVCDK 714
A HTKI + + TN++ + +K
Sbjct: 64 ALEDVGHTKIQFGWEKATNILLENRANPNAANK 96
>SB_40923| Best HMM Match : Pox_A_type_inc (HMM E-Value=0.29)
Length = 690
Score = 30.7 bits (66), Expect = 1.3
Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 3/104 (2%)
Frame = +1
Query: 130 TKAVELSPLVKEATIGPNSPAKKELIYEEKQIPAKIEPLPEDL---VEDKLRGDLGYNLI 300
TK ++ P VKE G PAK + E ++ L E+L E+K + + I
Sbjct: 588 TKKEDIQPEVKEQAEGAE-PAKVFTVTETVSDTKEVARLQEELNKFKEEKTKFEEEVKKI 646
Query: 301 MKECEAQLHQLSVEFFRKSFEQMICKRAEIMNKCFQKYSEQRER 432
+EC L +LS E + + C R F+K + + ++
Sbjct: 647 QEECTKHLDELSQEKDKLLKAEEECSRLGKEKTRFEKQASENKQ 690
>SB_8951| Best HMM Match : Mito_carr (HMM E-Value=0)
Length = 434
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/63 (25%), Positives = 37/63 (58%)
Frame = +1
Query: 304 KECEAQLHQLSVEFFRKSFEQMICKRAEIMNKCFQKYSEQRERRDMKYHKRKLQLQKDFH 483
+E A+ Q E RK E++ +R EI + FQ+ E+ E+R+ + +++ ++++++
Sbjct: 215 REKAAERKQKEEEEERKVQERLWLEREEIAQQEFQRRLEREEKREQERLEQESRIREEWE 274
Query: 484 END 492
E +
Sbjct: 275 EQE 277
>SB_5831| Best HMM Match : TolA (HMM E-Value=0.0037)
Length = 703
Score = 30.3 bits (65), Expect = 1.7
Identities = 18/78 (23%), Positives = 38/78 (48%)
Frame = +1
Query: 361 EQMICKRAEIMNKCFQKYSEQRERRDMKYHKRKLQLQKDFHENDNLNVLKIAKLDEQNNS 540
E+ + + A + ++ ++ ERR + KRK + ++ + D L +K + DE+
Sbjct: 174 EERLAEEARKKAEAKARFEQEAERRRREAEKRKAEEEEARRKADELEKIKRQQEDEER-- 231
Query: 541 AMINRQTIDNMNRILEEQ 594
+ Q +D + LEE+
Sbjct: 232 --LKNQRLDEERKKLEEE 247
>SB_21896| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 759
Score = 29.9 bits (64), Expect = 2.3
Identities = 31/122 (25%), Positives = 58/122 (47%), Gaps = 12/122 (9%)
Frame = +1
Query: 286 GYNLIMKECEAQLHQLSVEFFRKSFEQMICKRAEIMNK----CFQKY--SEQRERRDM-- 441
G+N+IM +++LH F F+++I R K F+ Y + RER+ +
Sbjct: 329 GFNIIMPIKKSKLHVNDAPFVTPQFKKLIHLRQSAFTKGDTVRFRHYRNAVNRERKALRA 388
Query: 442 KYHKRKLQLQKDFHEND-NLNVLKIAKLDEQNNSA-MINRQTIDNMNRILEEQ--NKATA 609
K++ K+ KD + NV +IA ++ + S +I+ ++ +R+ E NK +
Sbjct: 389 KFYASKVSHLKDSKPSQWWSNVKRIAGINPASGSGDLISTLQVEGFDRLSESDIVNKLNS 448
Query: 610 RF 615
F
Sbjct: 449 AF 450
>SB_30332| Best HMM Match : RVT_1 (HMM E-Value=2.7e-34)
Length = 1683
Score = 29.1 bits (62), Expect = 3.9
Identities = 23/90 (25%), Positives = 46/90 (51%)
Frame = +1
Query: 298 IMKECEAQLHQLSVEFFRKSFEQMICKRAEIMNKCFQKYSEQRERRDMKYHKRKLQLQKD 477
I ++ E + + E ++ E+ KR M +K E++++RD + KR+ + +KD
Sbjct: 602 IQEQMELERKRREEEERKRKQEEEERKRKMQMELQRRKEEEEQKKRDEEERKRREKEEKD 661
Query: 478 FHENDNLNVLKIAKLDEQNNSAMINRQTID 567
L ++A+ +EQ AMI+++ D
Sbjct: 662 --RQFQLEKQRLAE-EEQKRQAMIDQERRD 688
>SB_55370| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 187
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -1
Query: 721 VCICHKPVGTEAPKLLRL*FHYNR 650
VCI KP+GT PK++ HYNR
Sbjct: 31 VCISLKPIGTHGPKVIYS-RHYNR 53
>SB_41528| Best HMM Match : DUF1126 (HMM E-Value=2.7)
Length = 199
Score = 29.1 bits (62), Expect = 3.9
Identities = 15/88 (17%), Positives = 44/88 (50%)
Frame = +1
Query: 67 MRDSSIDETLAGFGKLRISALTKAVELSPLVKEATIGPNSPAKKELIYEEKQIPAKIEPL 246
++D ++ +L+ F S+L +++ P+V + AK+ L+Y++ + PA+ +
Sbjct: 99 LQDIAVGNSLS-FSTANQSSLPQSISAKPVVTLRITDLDEEAKERLLYDDCRNPAERRAV 157
Query: 247 PEDLVEDKLRGDLGYNLIMKECEAQLHQ 330
E L + + ++++ + ++ +
Sbjct: 158 AEKLTQPPTAAEQAEQQLVQQVQGEVRR 185
>SB_20734| Best HMM Match : Abi_HHR (HMM E-Value=3.59994e-42)
Length = 426
Score = 29.1 bits (62), Expect = 3.9
Identities = 25/95 (26%), Positives = 39/95 (41%), Gaps = 5/95 (5%)
Frame = +1
Query: 283 LGYNLIMKECEAQLHQL---SVEFFRKSFEQMICKRAEIMNKCFQKYSEQRERRDMKYHK 453
+ Y M E E LH L + R++ A++ N C QKYS+ R K
Sbjct: 25 VAYPSKMAEVEKLLHSLIEKEIPEGRQALRDGHENLAKVANYCQQKYSDCSNRYKTSPDK 84
Query: 454 RKL--QLQKDFHENDNLNVLKIAKLDEQNNSAMIN 552
+K+ + + F E +A + Q NS +N
Sbjct: 85 KKVLEESKAVFDETKQFTTQSLASVAYQINSLAVN 119
>SB_56062| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 728
Score = 28.7 bits (61), Expect = 5.2
Identities = 26/116 (22%), Positives = 48/116 (41%), Gaps = 9/116 (7%)
Frame = +1
Query: 394 NKCFQKYSEQRERRDMKYHKRKLQLQKDFHENDNLNVLKIAKLDEQNNSAMIN------R 555
+K + +++ R +K K + Q F + L++ IA D+ ++ +
Sbjct: 213 SKKISEVGTKQKSRKLKQLKERAQCALWFSKTFGLDIASIAFKDQSDDGKIYTLNYDEQE 272
Query: 556 QTIDNMNRILEEQNKATARFAAITDSHTKICICYNE---ITNVIASEPLSQQVCDK 714
+ D R+ EE+N + + D CY+E +TN I L +Q DK
Sbjct: 273 KNSDETQRLTEEENHRLEQVLFLLDKFCVSDECYHELSFLTNDIPRSYLIKQKRDK 328
>SB_33744| Best HMM Match : SMC_N (HMM E-Value=0)
Length = 1014
Score = 28.7 bits (61), Expect = 5.2
Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 5/87 (5%)
Frame = +1
Query: 319 QLHQLSVEFFRKSFE-QMICKRAEIMNKCFQKYSEQRERRDMKYHKRKLQLQKDFHENDN 495
+L + E KS E + + K +K +KY + +++ D+K H+ KL + +
Sbjct: 501 ELKEAQDELNSKSKELETVVKELATCSKVAEKYQQLKQQYDLKGHEAKLAETRMKQSTHH 560
Query: 496 LNVLKIA----KLDEQNNSAMINRQTI 564
L + +I LDEQ +++TI
Sbjct: 561 LQLEEIKTLENNLDEQQQLIEKSKETI 587
>SB_7462| Best HMM Match : PspA_IM30 (HMM E-Value=0.15)
Length = 393
Score = 28.7 bits (61), Expect = 5.2
Identities = 40/157 (25%), Positives = 74/157 (47%), Gaps = 15/157 (9%)
Frame = +1
Query: 175 GPNSPAKKELIYEEKQIPAK--IEPLPEDL--VEDKLRGDL-GYNLIMKECE---AQLHQ 330
GP+ +L E+K A+ +E L +D+ ++D+ L Y IM+E E A++ +
Sbjct: 89 GPSLDRHLKLSAEQKCDIAQRELEELRDDIEKLKDESEKILDNYRAIMEEAEIRNAEIKK 148
Query: 331 LSVEFFRKSFEQMICKRAEIMNKCFQKYSEQRERRDMKYH-KRKLQLQKDFHENDNLNVL 507
+S EF R + + + I + + + ++R + K+K ++ + HE D N L
Sbjct: 149 VSYEFERDLVKGAVNQDTLIEKLRLKNSTLKVQKRKLHMQLKQKEEMGEVLHEVD-FNQL 207
Query: 508 KIA------KLDEQNNSAMINRQTIDNMNRILEEQNK 600
KI K+DE+N + + N+ +IL K
Sbjct: 208 KIENQQYLEKIDEKNQDLLRLKLMSGNVQQILNTYKK 244
>SB_23193| Best HMM Match : Lipoprotein_17 (HMM E-Value=2.3)
Length = 711
Score = 28.7 bits (61), Expect = 5.2
Identities = 26/116 (22%), Positives = 48/116 (41%), Gaps = 9/116 (7%)
Frame = +1
Query: 394 NKCFQKYSEQRERRDMKYHKRKLQLQKDFHENDNLNVLKIAKLDEQNNSAMIN------R 555
+K + +++ R +K K + Q F + L++ IA D+ ++ +
Sbjct: 213 SKKISEVGTKQKSRKLKQLKERAQCALWFSKTFGLDIASIAFKDQSDDGKIYTLNYDEQE 272
Query: 556 QTIDNMNRILEEQNKATARFAAITDSHTKICICYNE---ITNVIASEPLSQQVCDK 714
+ D R+ EE+N + + D CY+E +TN I L +Q DK
Sbjct: 273 KNSDETQRLTEEENHRLEQVLFLLDKFCVSDECYHELSFLTNDIPRSYLIKQKRDK 328
>SB_16461| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 173
Score = 28.7 bits (61), Expect = 5.2
Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Frame = -1
Query: 610 ELWLYFVLLRFYSYCQLSAC*SLHCCSV-HLIWLFLIHLNCHFHENPSVAVVSVYGISCL 434
E WL V+ +F+ H V H+IWLF + L CH V+ ++ +S L
Sbjct: 72 ERWLCHVIWQFHVSLLFHVSSLCHVNYVYHVIWLFHVSLLCHVIY--MYHVIWLFHVSLL 129
Query: 433 CAHV 422
C HV
Sbjct: 130 C-HV 132
>SB_2516| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 850
Score = 28.7 bits (61), Expect = 5.2
Identities = 26/116 (22%), Positives = 48/116 (41%), Gaps = 9/116 (7%)
Frame = +1
Query: 394 NKCFQKYSEQRERRDMKYHKRKLQLQKDFHENDNLNVLKIAKLDEQNNSAMIN------R 555
+K + +++ R +K K + Q F + L++ IA D+ ++ +
Sbjct: 708 SKKISEVGTKQKSRKLKQLKERAQCALWFSKTFGLDIASIAFKDQSDDGKIYTLNYDEQE 767
Query: 556 QTIDNMNRILEEQNKATARFAAITDSHTKICICYNE---ITNVIASEPLSQQVCDK 714
+ D R+ EE+N + + D CY+E +TN I L +Q DK
Sbjct: 768 KNSDETQRLTEEENHRLEQVLFLLDKFCVSDECYHELSFLTNDIPRSYLIKQKRDK 823
>SB_38786| Best HMM Match : HLH (HMM E-Value=1e-13)
Length = 817
Score = 28.3 bits (60), Expect = 6.9
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +1
Query: 79 SIDETLAGFGKLRISALTKAVELSPLVKEATIGPNSPAKKELIYE 213
S TL + ++ LTK ++ S EA P+K++LIY+
Sbjct: 225 SSQPTLNAINQQAVATLTKRLKPSVTSSEAAANAERPSKEQLIYQ 269
>SB_28699| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 81
Score = 28.3 bits (60), Expect = 6.9
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = +1
Query: 397 KCFQKYSEQRERRDMKYHKRKLQLQKDFHEN 489
KC + +QR+R ++ H+R+ +L+ D EN
Sbjct: 14 KCEEYLKDQRDRENVTIHRRRRKLKVDDGEN 44
>SB_3063| Best HMM Match : Lig_chan (HMM E-Value=5.4e-13)
Length = 880
Score = 28.3 bits (60), Expect = 6.9
Identities = 15/70 (21%), Positives = 32/70 (45%)
Frame = +1
Query: 391 MNKCFQKYSEQRERRDMKYHKRKLQLQKDFHENDNLNVLKIAKLDEQNNSAMINRQTIDN 570
+ KC + Y+ R R + H++ L+ + D+ + I+ E+ M++ +I N
Sbjct: 801 LRKCTETYNRGRRRFSNEIHRKLLEFNRR-ENRDSQELPDISHYMEERRKTMVSLHSIYN 859
Query: 571 MNRILEEQNK 600
I + N+
Sbjct: 860 PRAIKSKLNE 869
>SB_59222| Best HMM Match : Filament (HMM E-Value=0.95)
Length = 411
Score = 27.9 bits (59), Expect = 9.1
Identities = 27/120 (22%), Positives = 51/120 (42%)
Frame = +1
Query: 235 IEPLPEDLVEDKLRGDLGYNLIMKECEAQLHQLSVEFFRKSFEQMICKRAEIMNKCFQKY 414
IE + + E++L+ + +E E H+L K E+ +I +KY
Sbjct: 251 IETIQHSVQEEQLQDCSPDANLNEELETLRHKLEEVTAEKEAEKQ-----QIREDLSKKY 305
Query: 415 SEQRERRDMKYHKRKLQLQKDFHENDNLNVLKIAKLDEQNNSAMINRQTIDNMNRILEEQ 594
E R +D K K ++++ N LN+ KL N+ +++ I+ +N L +
Sbjct: 306 DELRFHKDSVIAKLKDKIREKIELNKKLNIEHKEKL---GNTVKEHKKAINELNERLSNE 362
>SB_49770| Best HMM Match : SURF6 (HMM E-Value=0.92)
Length = 270
Score = 27.9 bits (59), Expect = 9.1
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +1
Query: 418 EQRERRDMKYHKRKLQLQKDFHENDNLNVL 507
E ++RR + KRK QLQK EN + +L
Sbjct: 241 EAQKRRKQRAKKRKQQLQKQIEENKVMLIL 270
>SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3934
Score = 27.9 bits (59), Expect = 9.1
Identities = 18/80 (22%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
Frame = +1
Query: 406 QKYSEQRERRDMKYHKRKLQLQKDFHENDNLNVLKI-----AKLDEQNNSAMINRQTIDN 570
++ +EQ +R+D K H ++K+ +N N K+ A ++E N I +
Sbjct: 1182 KELAEQLQRKDAKIHNLTATMEKNKKSTENENWGKMVDELRAAVEESQNQCKFFETRIQD 1241
Query: 571 MNRILEEQNKATARFAAITD 630
+ L E+++ A D
Sbjct: 1242 LRNDLSEKDRTIIELQAQMD 1261
>SB_16545| Best HMM Match : Cullin (HMM E-Value=0)
Length = 471
Score = 27.9 bits (59), Expect = 9.1
Identities = 11/41 (26%), Positives = 23/41 (56%)
Frame = +1
Query: 250 EDLVEDKLRGDLGYNLIMKECEAQLHQLSVEFFRKSFEQMI 372
EDL K + Y+ +++ECEA++ + + + + QM+
Sbjct: 96 EDLRARKFLHPVSYSRVIRECEARMVEEHIPYLQAECRQMV 136
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.316 0.131 0.363
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,651,246
Number of Sequences: 59808
Number of extensions: 410571
Number of successful extensions: 1249
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1062
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1240
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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