Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0523
         (739 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    24   1.7  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    24   1.7  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          22   6.9  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      22   6.9  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   9.1  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   9.1  

>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 16/75 (21%), Positives = 33/75 (44%)
 Frame = +1

Query: 352 KSFEQMICKRAEIMNKCFQKYSEQRERRDMKYHKRKLQLQKDFHENDNLNVLKIAKLDEQ 531
           K  E+   ++    ++  ++ S + ER+  KY +R  +  +D  E +     KI  +   
Sbjct: 28  KLLEERTSRKRYSRSREREQKSYKNERKYRKYRERSKERSRDRTERERSREPKI--ISSL 85

Query: 532 NNSAMINRQTIDNMN 576
           +N  + N    +N N
Sbjct: 86  SNKTIHNNNNYNNNN 100


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 16/75 (21%), Positives = 33/75 (44%)
 Frame = +1

Query: 352 KSFEQMICKRAEIMNKCFQKYSEQRERRDMKYHKRKLQLQKDFHENDNLNVLKIAKLDEQ 531
           K  E+   ++    ++  ++ S + ER+  KY +R  +  +D  E +     KI  +   
Sbjct: 28  KLLEERTSRKRYSRSREREQKSYKNERKYRKYRERSKERSRDRTERERSREPKI--ISSL 85

Query: 532 NNSAMINRQTIDNMN 576
           +N  + N    +N N
Sbjct: 86  SNKTIHNNNNYNNNN 100


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 5/21 (23%), Positives = 12/21 (57%)
 Frame = -2

Query: 273 ELIFNKVLWQRFNFGGDLFFF 211
           ++ +N  +W RFN    ++ +
Sbjct: 120 DVFYNTAVWARFNVNEQMYLY 140


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 5/21 (23%), Positives = 12/21 (57%)
 Frame = -2

Query: 273 ELIFNKVLWQRFNFGGDLFFF 211
           ++ +N  +W RFN    ++ +
Sbjct: 120 DVFYNTAVWARFNVNEQMYLY 140


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = -3

Query: 590 SSKILFILSIVCLLI 546
           SSKI FILS+V L I
Sbjct: 23  SSKIEFILSVVGLAI 37


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = -3

Query: 590 SSKILFILSIVCLLI 546
           SSKI FILS+V L I
Sbjct: 76  SSKIEFILSVVGLAI 90


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.316    0.131    0.363 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,474
Number of Sequences: 438
Number of extensions: 4064
Number of successful extensions: 17
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)