Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0522
         (697 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0137 - 31937541-31939892                                         32   0.38 
09_03_0158 - 12878690-12879687,12880115-12880178,12880580-12880645     29   4.7  
07_01_0115 + 851505-852368,852611-852730,853000-853020,853253-85...    29   4.7  
02_05_0352 + 28240913-28241362                                         29   4.7  
06_03_0533 - 21849923-21850231,21851612-21852121                       28   8.1  
05_04_0089 - 17821196-17821306,17821611-17821688,17821801-178218...    28   8.1  
03_01_0250 - 1937650-1939071,1939375-1939468,1939665-1939870,193...    28   8.1  

>03_06_0137 - 31937541-31939892
          Length = 783

 Score = 32.3 bits (70), Expect = 0.38
 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
 Frame = +1

Query: 61  KQGHKTSVRYLINISNNRNQEAIAAEIGFFHP--RLDKEVVIKSNAVFKVPEPNRYILES 234
           K G   S R +  + NNR+  A  A I  +    R D+ + +  + +   PEPN Y L +
Sbjct: 356 KIGDMESAREMFGVMNNRDVVAWTAMIVGYEQNGRNDEAIDLFRSMITCGPEPNSYTLAA 415

Query: 235 SVSLCHS 255
            +S+C S
Sbjct: 416 VLSVCAS 422


>09_03_0158 - 12878690-12879687,12880115-12880178,12880580-12880645
          Length = 375

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 634 F*PGYLAGKVPRGRCFSCHQI 572
           F P Y+ GK+ R  C  CHQ+
Sbjct: 86  FTPIYIDGKLARAECMHCHQV 106


>07_01_0115 +
           851505-852368,852611-852730,853000-853020,853253-853369,
           853466-853555,853730-853837,853897-853932,853933-854022
          Length = 481

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -3

Query: 221 YRFGSGTLKTAFDLMTTSLSSLGWKNPISAAIAS 120
           +R G  T   AFD MT   +S+   NP+ AA++S
Sbjct: 72  FRGGVATRSVAFDEMTPRRASVDVPNPLRAALSS 105


>02_05_0352 + 28240913-28241362
          Length = 149

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 5/49 (10%)
 Frame = +2

Query: 35  RPASTWIRRNRDTRPLLDTSS----TSP-IIGIRKLLQPKSDSSTQDLI 166
           R  STW   +R +RP + T+S    T P ++G+RK  +P+ +  T +L+
Sbjct: 73  RTCSTWTSLSRTSRPTMATTSGVVKTLPELVGLRK--EPRWEDKTTELL 119


>06_03_0533 - 21849923-21850231,21851612-21852121
          Length = 272

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 13/36 (36%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
 Frame = -3

Query: 620 SCRKSAPWAMFFLSPDRMISAVISTLFSG-TK*PTI 516
           +CRK A  ++FF++P++   + ++ L SG  K PT+
Sbjct: 144 TCRKLAQESVFFITPEQFYQSHLTPLQSGCCKPPTV 179


>05_04_0089 -
           17821196-17821306,17821611-17821688,17821801-17821863,
           17822167-17823021,17823121-17823236,17823930-17824004,
           17826156-17826213
          Length = 451

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 23/97 (23%), Positives = 40/97 (41%)
 Frame = +1

Query: 154 PRLDKEVVIKSNAVFKVPEPNRYILESSVSLCHSSLGADRVSKLLLDVSPTKFVFLAQTP 333
           P L +  VI + +     E     LES  S   +++ +    + L + SP+K   + +  
Sbjct: 300 PPLKEVPVISAESAHHWKETLNVSLESHFSSTETNVVSSECPETLENTSPSKEFAILRDT 359

Query: 334 FVKVIDLEGTVDVQSKAKTQQAKLRFKLLEGKEVSVQ 444
            V   +L    D      T+ + L  KL E + V V+
Sbjct: 360 LVNAENLHYVTDDVQNLMTKLSNLEAKLEEAESVIVK 396


>03_01_0250 -
           1937650-1939071,1939375-1939468,1939665-1939870,
           1939986-1940132
          Length = 622

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 22/76 (28%), Positives = 35/76 (46%)
 Frame = +1

Query: 223 ILESSVSLCHSSLGADRVSKLLLDVSPTKFVFLAQTPFVKVIDLEGTVDVQSKAKTQQAK 402
           I+ +S+ L H SL   R   LL DV   +  F      + + D     D   ++ +   K
Sbjct: 352 IIATSLCLTHVSL---RWCNLLTDVGIERLSFNKDLNVLDLRDCRSLGDEAVRSLSCLPK 408

Query: 403 LRFKLLEGKEVSVQAL 450
           L+   L+G ++S QAL
Sbjct: 409 LQILFLDGSDISDQAL 424


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.135    0.373 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,080,875
Number of Sequences: 37544
Number of extensions: 410481
Number of successful extensions: 944
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 944
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)