Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0522
         (697 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20851| Best HMM Match : Cbl_N3 (HMM E-Value=0)                      31   0.89 
SB_51713| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.89 
SB_53556| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_4617| Best HMM Match : Extensin_2 (HMM E-Value=0.38)                29   2.7  
SB_28397| Best HMM Match : DUF1605 (HMM E-Value=6.1)                   29   3.6  
SB_6388| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.6  
SB_46916| Best HMM Match : Rop (HMM E-Value=5.3)                       29   4.8  
SB_41622| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_43031| Best HMM Match : OEP (HMM E-Value=0.27)                      28   6.3  
SB_43733| Best HMM Match : Rop (HMM E-Value=6.2)                       28   8.3  
SB_19401| Best HMM Match : Rop (HMM E-Value=3)                         28   8.3  
SB_24229| Best HMM Match : Fukutin-related (HMM E-Value=0.61)          28   8.3  
SB_21518| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     28   8.3  

>SB_20851| Best HMM Match : Cbl_N3 (HMM E-Value=0)
          Length = 695

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -3

Query: 653 LDSP*SLLTRLSCRKSAPWAMFFLSPDRMISAVI 552
           +D P S + RLSC K   WA+ +++P+  I   I
Sbjct: 89  VDKPGSYIFRLSCTKLGQWAIGYVTPEHTILQTI 122


>SB_51713| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 867

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -3

Query: 653 LDSP*SLLTRLSCRKSAPWAMFFLSPDRMISAVI 552
           +D P S + RLSC K   WA+ +++P+  I   I
Sbjct: 298 VDKPGSYIFRLSCTKLGQWAIGYVTPEHTILQTI 331


>SB_53556| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1524

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +1

Query: 121 EAIAAEIGFFHPRLDKEVVIKSNAVFKVPEPN 216
           EA+ AEI    P++++EVV++S A     EP+
Sbjct: 523 EALKAEIDALKPKIEEEVVVQSAAPVAAGEPD 554


>SB_4617| Best HMM Match : Extensin_2 (HMM E-Value=0.38)
          Length = 450

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 20/69 (28%), Positives = 34/69 (49%)
 Frame = +1

Query: 178 IKSNAVFKVPEPNRYILESSVSLCHSSLGADRVSKLLLDVSPTKFVFLAQTPFVKVIDLE 357
           ++S AV + P P  +   +S  +  S +     S     +SP+   F+AQ+P    +   
Sbjct: 178 VQSPAVMRAPTPAPHPSPASQPVAPSPVCIPVQSPAPNMMSPSPQQFIAQSPAPTSVPTP 237

Query: 358 GTVDVQSKA 384
           GT++VQS A
Sbjct: 238 GTLNVQSPA 246


>SB_28397| Best HMM Match : DUF1605 (HMM E-Value=6.1)
          Length = 325

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 17/56 (30%), Positives = 29/56 (51%)
 Frame = -3

Query: 362 VPSKSITFTNGVWAKKTNLVGETSNNSLETRSAPREE*HRLTDDSRIYRFGSGTLK 195
           +PSK+   +  +W+++  L    S++  +   APR   H     SR+Y F  GTL+
Sbjct: 155 IPSKNGGESAPLWSQRQELHPPLSDSPCQ---APRYNGHSTITGSRLYYFAMGTLR 207


>SB_6388| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1520

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/47 (29%), Positives = 27/47 (57%)
 Frame = -2

Query: 222 ISIWFRDLEDCVRLDDYLLIKSWVEESDFGCNSFLIPIIGDVDEVSN 82
           +S W R++ D    D+   ++ WV+++  G  S++   I DVDE+ +
Sbjct: 50  LSCWRRNIADVTVDDERTKLREWVDKTKKG--SWISRWISDVDEIES 94


>SB_46916| Best HMM Match : Rop (HMM E-Value=5.3)
          Length = 373

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +1

Query: 577 GDKKNIAHGALFLQDNLVKSDYGLSKENFNY 669
           GD +    G LFL D+L K D G+ +  FN+
Sbjct: 288 GDFRMAKFGNLFLSDDLHKVDRGIQEGEFNF 318


>SB_41622| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 472

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +1

Query: 577 GDKKNIAHGALFLQDNLVKSDYGLSKENFNY 669
           GD +    G LFL D+L K D G+ +  FN+
Sbjct: 242 GDFRMAKFGNLFLSDDLHKVDRGIQEGEFNF 272


>SB_43031| Best HMM Match : OEP (HMM E-Value=0.27)
          Length = 445

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 22/89 (24%), Positives = 38/89 (42%)
 Frame = +1

Query: 376 SKAKTQQAKLRFKLLEGKEVSVQALAKDFQYFEFTTGYLEEADRKLSIVGHLVPEKRVDI 555
           +KAK + AK ++KL + K    +A   D Q            ++  S +  +V  K  D 
Sbjct: 349 AKAKYKLAKAKYKLAKAKYKLAKAKITDMQVIR------NRMNKSASRLTGIVFRKFTDT 402

Query: 556 TADIILSGDKKNIAHGALFLQDNLVKSDY 642
              ++  G K    HG ++L+  L+   Y
Sbjct: 403 GPSLVRWGTKHLKDHGRIYLEMTLIHGVY 431


>SB_43733| Best HMM Match : Rop (HMM E-Value=6.2)
          Length = 412

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 577 GDKKNIAHGALFLQDNLVKSDYGLSKENFNY 669
           GD K    G LFL D L K D G+ +  F++
Sbjct: 210 GDLKMAKFGNLFLSDELHKVDRGIQEGEFSF 240


>SB_19401| Best HMM Match : Rop (HMM E-Value=3)
          Length = 451

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 577 GDKKNIAHGALFLQDNLVKSDYGLSKENFNY 669
           GD K    G LFL D L K D G+ +  F++
Sbjct: 216 GDLKMAKFGNLFLSDELHKVDRGIQEGEFSF 246


>SB_24229| Best HMM Match : Fukutin-related (HMM E-Value=0.61)
          Length = 604

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +1

Query: 577 GDKKNIAHGALFLQDNLVKSDYGLSKENFNY 669
           GD K    G LFL D L K D G+ +  F++
Sbjct: 454 GDLKMAKFGNLFLSDELHKVDRGIQEGEFSF 484


>SB_21518| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 376

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +1

Query: 205 PEPNRYILESS-VSLCHSSLGADRVSKLLLDVSPTKFV 315
           P+P R+I++   V+  HS      V K    +SPT FV
Sbjct: 101 PDPRRHIIKQEHVTAAHSQSSPSTVWKAWAPLSPTSFV 138


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.135    0.373 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,844,100
Number of Sequences: 59808
Number of extensions: 469651
Number of successful extensions: 1155
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1154
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)