Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0522
         (697 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY060913-1|AAL28461.1|  155|Drosophila melanogaster GM05817p pro...    34   0.16 
AE013599-1797|AAM68563.1|  155|Drosophila melanogaster CG30481-P...    34   0.16 
AE014298-1623|AAF48046.1|  837|Drosophila melanogaster CG1745-PB...    30   3.5  
AY061428-1|AAL28976.1|  971|Drosophila melanogaster LD35896p pro...    29   6.0  
AE014297-2451|AAF55502.1|  971|Drosophila melanogaster CG7212-PA...    29   6.0  
AE013599-1514|ABI31087.1|  180|Drosophila melanogaster CG33632-P...    29   6.0  

>AY060913-1|AAL28461.1|  155|Drosophila melanogaster GM05817p
           protein.
          Length = 155

 Score = 34.3 bits (75), Expect = 0.16
 Identities = 27/103 (26%), Positives = 46/103 (44%)
 Frame = +1

Query: 298 SPTKFVFLAQTPFVKVIDLEGTVDVQSKAKTQQAKLRFKLLEGKEVSVQALAKDFQYFEF 477
           S  +F+FL  TP V   + +  V  +     Q A ++F L++  +   QA  K+ ++   
Sbjct: 47  STREFLFLLSTPKVAATNPKCVVKPEIVCDRQPANIKFALIDSAQ--EQAQVKEIRFNSD 104

Query: 478 TTGYLEEADRKLSIVGHLVPEKRVDITADIILSGDKKNIAHGA 606
               LE        V  L P  R +IT  ++   +K+ +A GA
Sbjct: 105 NLNTLELLQLCNKHVSSLAP--REEITNKVLTKAEKQKLAGGA 145


>AE013599-1797|AAM68563.1|  155|Drosophila melanogaster CG30481-PA,
           isoform A protein.
          Length = 155

 Score = 34.3 bits (75), Expect = 0.16
 Identities = 27/103 (26%), Positives = 46/103 (44%)
 Frame = +1

Query: 298 SPTKFVFLAQTPFVKVIDLEGTVDVQSKAKTQQAKLRFKLLEGKEVSVQALAKDFQYFEF 477
           S  +F+FL  TP V   + +  V  +     Q A ++F L++  +   QA  K+ ++   
Sbjct: 47  STREFLFLLSTPKVAATNPKCVVKPEIVCDRQPANIKFALIDSAQ--EQAQVKEIRFNSD 104

Query: 478 TTGYLEEADRKLSIVGHLVPEKRVDITADIILSGDKKNIAHGA 606
               LE        V  L P  R +IT  ++   +K+ +A GA
Sbjct: 105 NLNTLELLQLCNKHVSSLAP--REEITNKVLTKAEKQKLAGGA 145


>AE014298-1623|AAF48046.1|  837|Drosophila melanogaster CG1745-PB,
           isoform B protein.
          Length = 837

 Score = 29.9 bits (64), Expect = 3.5
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 538 EKRVDITADIILSGDKKNIAHGALFLQDNLVKS 636
           EK  D   +++L  D+KN+   A  + DN VKS
Sbjct: 600 EKSEDAREEVLLDEDEKNLEENAAEISDNAVKS 632


>AY061428-1|AAL28976.1|  971|Drosophila melanogaster LD35896p
           protein.
          Length = 971

 Score = 29.1 bits (62), Expect = 6.0
 Identities = 13/33 (39%), Positives = 23/33 (69%)
 Frame = +1

Query: 520 VGHLVPEKRVDITADIILSGDKKNIAHGALFLQ 618
           VG+L P  +VD  ADI+L+ ++K  A  A++++
Sbjct: 885 VGYLTPRSQVDKFADILLAMNRKYAAEMAVWMK 917


>AE014297-2451|AAF55502.1|  971|Drosophila melanogaster CG7212-PA
           protein.
          Length = 971

 Score = 29.1 bits (62), Expect = 6.0
 Identities = 13/33 (39%), Positives = 23/33 (69%)
 Frame = +1

Query: 520 VGHLVPEKRVDITADIILSGDKKNIAHGALFLQ 618
           VG+L P  +VD  ADI+L+ ++K  A  A++++
Sbjct: 885 VGYLTPRSQVDKFADILLAMNRKYAAEMAVWMK 917


>AE013599-1514|ABI31087.1|  180|Drosophila melanogaster CG33632-PA
           protein.
          Length = 180

 Score = 29.1 bits (62), Expect = 6.0
 Identities = 26/97 (26%), Positives = 39/97 (40%), Gaps = 4/97 (4%)
 Frame = +1

Query: 409 FKLLEGKEVSVQALAKDFQYFEFTTGYLEEADRKLSIVGHLVPEKRVDITADIILSGDKK 588
           + L+E   V  + L KDF  FE+   YL+  +R    V   V   ++ +T   +  G  K
Sbjct: 23  YSLVEFTNVQCETLDKDFSLFEYC--YLQSVNRSYKYVSLKVKLLKIPVTKIKVQFGLYK 80

Query: 589 NIAHGALFLQDNLVKSDYGLSKENFN----YFLNALK 687
            +     FL +  +     L   N N    YF N  K
Sbjct: 81  RLNGYKPFLYNMTLDGCRFLKSRNPNPIALYFYNLFK 117


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.135    0.373 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,565,005
Number of Sequences: 53049
Number of extensions: 682246
Number of successful extensions: 1757
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1756
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3046624548
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)