Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0522
         (697 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z35602-1|CAA84669.1| 1469|Caenorhabditis elegans Hypothetical pr...    32   0.34 
L35274-1|AAA62647.1| 1469|Caenorhabditis elegans chromosome cond...    32   0.34 
Z81120-7|CAB03343.2|  274|Caenorhabditis elegans Hypothetical pr...    29   4.2  
Z69361-3|CAA93289.1|  533|Caenorhabditis elegans Hypothetical pr...    28   5.5  
Z68882-20|CAA93112.1|  533|Caenorhabditis elegans Hypothetical p...    28   5.5  
X89223-1|CAA61507.1|  582|Caenorhabditis elegans sli-1 protein.        28   5.5  
U58730-5|AAK84546.1|  582|Caenorhabditis elegans Suppressor of l...    28   5.5  
U58730-4|AAK84547.1|  565|Caenorhabditis elegans Suppressor of l...    28   5.5  
U58730-3|AAT92069.1|  523|Caenorhabditis elegans Suppressor of l...    28   5.5  

>Z35602-1|CAA84669.1| 1469|Caenorhabditis elegans Hypothetical protein
            R13G10.1 protein.
          Length = 1469

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
 Frame = +1

Query: 373  QSKAKTQQAKLRFKLLEGKEVSVQALAKDFQYFEFTTGYLEEADRKLSIVGHLVPEKR-- 546
            ++K   +QAK R   LE      Q +A+     E    +LE+A++KLS + H+  EKR  
Sbjct: 913  KNKDSIEQAKDRMGQLE------QDIARQTAIIENNPSHLEQAEKKLSELEHMCLEKRSE 966

Query: 547  VDITADIILSGDKKNI 594
             D  A + +  D K I
Sbjct: 967  ADALAQLEVGEDVKGI 982


>L35274-1|AAA62647.1| 1469|Caenorhabditis elegans chromosome
            condensation protein protein.
          Length = 1469

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
 Frame = +1

Query: 373  QSKAKTQQAKLRFKLLEGKEVSVQALAKDFQYFEFTTGYLEEADRKLSIVGHLVPEKR-- 546
            ++K   +QAK R   LE      Q +A+     E    +LE+A++KLS + H+  EKR  
Sbjct: 913  KNKDSIEQAKDRMGQLE------QDIARQTAIIENNPSHLEQAEKKLSELEHMCLEKRSE 966

Query: 547  VDITADIILSGDKKNI 594
             D  A + +  D K I
Sbjct: 967  ADALAQLEVGEDVKGI 982


>Z81120-7|CAB03343.2|  274|Caenorhabditis elegans Hypothetical
           protein T12D8.3 protein.
          Length = 274

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = -3

Query: 446 AWTLTSLPSRSLNLNLACWVFALLCTSTVPSKSITFTNGVWAKKTNLVG 300
           +W   S  SRS  +   C + A L TS  P       +G+W K  + +G
Sbjct: 85  SWLANSQMSRSRAMEAYCELMAQLDTSWDPDAETVKKSGLWEKMPSTMG 133


>Z69361-3|CAA93289.1|  533|Caenorhabditis elegans Hypothetical
           protein T13H10.1 protein.
          Length = 533

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +1

Query: 634 SDYGLSKENFNYFLNALKKRP 696
           SD+GLS+E ++Y +N  KK P
Sbjct: 264 SDFGLSREGYSYRMNPHKKVP 284


>Z68882-20|CAA93112.1|  533|Caenorhabditis elegans Hypothetical
           protein T13H10.1 protein.
          Length = 533

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +1

Query: 634 SDYGLSKENFNYFLNALKKRP 696
           SD+GLS+E ++Y +N  KK P
Sbjct: 264 SDFGLSREGYSYRMNPHKKVP 284


>X89223-1|CAA61507.1|  582|Caenorhabditis elegans sli-1 protein.
          Length = 582

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -3

Query: 644 P*SLLTRLSCRKSAPWAMFFLSPDRMISAVI 552
           P S + RLSC +   WA+ +++PD  I   I
Sbjct: 297 PGSYIFRLSCTRPGQWAIGYVAPDGKIYQTI 327


>U58730-5|AAK84546.1|  582|Caenorhabditis elegans Suppressor of
           lineage defect protein1, isoform a protein.
          Length = 582

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -3

Query: 644 P*SLLTRLSCRKSAPWAMFFLSPDRMISAVI 552
           P S + RLSC +   WA+ +++PD  I   I
Sbjct: 297 PGSYIFRLSCTRPGQWAIGYVAPDGKIYQTI 327


>U58730-4|AAK84547.1|  565|Caenorhabditis elegans Suppressor of
           lineage defect protein1, isoform b protein.
          Length = 565

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -3

Query: 644 P*SLLTRLSCRKSAPWAMFFLSPDRMISAVI 552
           P S + RLSC +   WA+ +++PD  I   I
Sbjct: 280 PGSYIFRLSCTRPGQWAIGYVAPDGKIYQTI 310


>U58730-3|AAT92069.1|  523|Caenorhabditis elegans Suppressor of
           lineage defect protein1, isoform c protein.
          Length = 523

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -3

Query: 644 P*SLLTRLSCRKSAPWAMFFLSPDRMISAVI 552
           P S + RLSC +   WA+ +++PD  I   I
Sbjct: 280 PGSYIFRLSCTRPGQWAIGYVAPDGKIYQTI 310


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.135    0.373 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,145,769
Number of Sequences: 27780
Number of extensions: 346606
Number of successful extensions: 945
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 945
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)