Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0522
         (697 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g61150.2 68418.m07672 leo1-like family protein weak similarit...    29   3.9  
At5g61150.1 68418.m07671 leo1-like family protein weak similarit...    29   3.9  
At4g07435.1 68417.m01141 cytochrome P-450 aromatase-related simi...    28   5.1  
At5g19820.1 68418.m02355 PBS lyase HEAT-like repeat-containing p...    27   9.0  

>At5g61150.2 68418.m07672 leo1-like family protein weak similarity
           to SP|P38439 LEO1 protein {Saccharomyces cerevisiae};
           contains Pfam profile PF04004: Leo1-like protein;
           supporting cDNA gi|21929714|gb|AF490422.1|
          Length = 623

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = +1

Query: 346 IDLEGTVDVQSKAKTQQAKLRFKLLEGKEVSVQALAKDFQYFEFTTGYLEEA 501
           ID E   + + KA++Q  K   KL + +E   +      +  + +TGYLE+A
Sbjct: 412 IDPEREKEKREKAESQNLKASTKLSQAREKIKRKYPLPVERRQLSTGYLEDA 463


>At5g61150.1 68418.m07671 leo1-like family protein weak similarity
           to SP|P38439 LEO1 protein {Saccharomyces cerevisiae};
           contains Pfam profile PF04004: Leo1-like protein;
           supporting cDNA gi|21929714|gb|AF490422.1|
          Length = 625

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 16/52 (30%), Positives = 27/52 (51%)
 Frame = +1

Query: 346 IDLEGTVDVQSKAKTQQAKLRFKLLEGKEVSVQALAKDFQYFEFTTGYLEEA 501
           ID E   + + KA++Q  K   KL + +E   +      +  + +TGYLE+A
Sbjct: 412 IDPEREKEKREKAESQNLKASTKLSQAREKIKRKYPLPVERRQLSTGYLEDA 463


>At4g07435.1 68417.m01141 cytochrome P-450 aromatase-related similar
           to minor outer capsid protein VP4 (GI:13446784) [Human
           rotavirus C]; similar to cytochrome P-450 aromatase
           (GI:21170) [Gallus gallus];
          Length = 193

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 16/88 (18%), Positives = 40/88 (45%)
 Frame = -3

Query: 569 MISAVISTLFSGTK*PTIESLRSASSR*PVVNSKYWKSFARAWTLTSLPSRSLNLNLACW 390
           MI A+ +  + G   PT+ +      + P+ ++K    F +   ++ +P+R  +      
Sbjct: 1   MIDAICAYFYIGYDVPTVLNEGGGGRKPPLTDNKLRIKFIQTTKMSPVPNRESSNFFRFV 60

Query: 389 VFALLCTSTVPSKSITFTNGVWAKKTNL 306
            F+++   T+ S ++    G+  +  N+
Sbjct: 61  AFSMIENKTIDSSTVHDAYGIVVRVGNI 88


>At5g19820.1 68418.m02355 PBS lyase HEAT-like repeat-containing
           protein contains Pfam profile: PF03130 PBS lyase
           HEAT-like repeat
          Length = 1116

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 9/27 (33%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
 Frame = -2

Query: 570 DDISGYIYSLF-RDQMTDDRELAVCLF 493
           D++S Y+  ++ RD+  ++R +A+C+F
Sbjct: 881 DELSSYLTPMWGRDKTAEERRIAICIF 907


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.135    0.373 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,496,643
Number of Sequences: 28952
Number of extensions: 333511
Number of successful extensions: 1005
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1005
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)