Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0521
         (656 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetyla...    23   2.2  
EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetyla...    23   2.2  
AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein pr...    21   8.9  
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    21   8.9  

>EU019713-1|ABU25225.1|  528|Tribolium castaneum chitin deacetylase
           2B protein.
          Length = 528

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -1

Query: 383 SIGTCSLINWCSEVQLFDDFAR 318
           S+  C +++ CS +Q  + FAR
Sbjct: 374 SLPGCHMVDSCSNIQTGEQFAR 395


>EU019712-1|ABU25224.1|  535|Tribolium castaneum chitin deacetylase
           2A protein.
          Length = 535

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -1

Query: 383 SIGTCSLINWCSEVQLFDDFAR 318
           S+  C +++ CS +Q  + FAR
Sbjct: 381 SLPGCHMVDSCSNIQTGEQFAR 402


>AJ606487-1|CAE55183.1|  203|Tribolium castaneum Giant protein
           protein.
          Length = 203

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = -3

Query: 102 CQRKRPRRAPPTRHTCP 52
           C RKRP    P    CP
Sbjct: 18  CVRKRPHSPEPYPPRCP 34


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 12/36 (33%), Positives = 17/36 (47%)
 Frame = +3

Query: 318 PGKIVKELNLRAPIYQRTSTYGHFGRAGFPWESPKP 425
           P +    L L  PI QRT++         P +SP+P
Sbjct: 189 PTQGASPLPLLVPIPQRTASTASSASNYSPSQSPEP 224


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,510
Number of Sequences: 336
Number of extensions: 3633
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16969115
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)