Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0521
         (656 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.05c |sam1||S-adenosylmethionine synthetase |Schizosacch...   191   7e-50
SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa...    28   1.0  
SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomy...    25   7.3  
SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|ch...    25   7.3  

>SPBC14F5.05c |sam1||S-adenosylmethionine synthetase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 382

 Score =  191 bits (466), Expect = 7e-50
 Identities = 90/142 (63%), Positives = 105/142 (73%)
 Frame = +3

Query: 3   IGGPQSDAGLTGRKIIVDTYXXXXXXXXXXXXXKDFTKVDRSAAYAARWVAKSLVKAGLC 182
           +GGPQ DAGLTGRKIIVDTY             KD++KVDRSAAYAARW+AKSLV AGL 
Sbjct: 239 VGGPQGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDYSKVDRSAAYAARWIAKSLVAAGLA 298

Query: 183 RRCMVQVAYAIGVAEPLSITVFDYGTSHKTQQQLLSIVQKNFDLRPGKIVKELNLRAPIY 362
           RRC+VQ++YAIGVAEPLSI V  YGTS KT  +L+ I++KNFDLRPG +VK L L+ P Y
Sbjct: 299 RRCLVQLSYAIGVAEPLSIFVNTYGTSSKTSAELVEIIRKNFDLRPGVLVKSLKLQTPFY 358

Query: 363 QRTSTYGHFGRAGFPWESPKPL 428
             T++YGHF     PWE PK L
Sbjct: 359 LSTASYGHFTDQSKPWEQPKEL 380


>SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 528

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 14/32 (43%), Positives = 20/32 (62%)
 Frame = -2

Query: 529 SALDTMTHIHKCLLYTDGIFTLF*CSGFASHS 434
           SALDT+ HI K   + +G+ T   C+ F +HS
Sbjct: 178 SALDTILHIKKFSKFPNGLVTQL-CNIFVNHS 208


>SPBC660.14 |mik1||mitotic inhibitor kinase Mik1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 581

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
 Frame = +2

Query: 323 QNRQRVEPQSTNLSENKYLWTLWKGRI--PLGESQAADCRMTCK 448
           + ++ V   ST L   +  W+LW+G +  P  E     C+   K
Sbjct: 123 KRKRAVTSLSTGLLSKREKWSLWEGNLTNPRSEQPHTPCKKGTK 166


>SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 752

 Score = 25.4 bits (53), Expect = 7.3
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +2

Query: 272 SATTALHRTKEFRFTTGQNRQRVEPQSTNLSENKYLWTLWKG 397
           SA  A     +  F  G++   ++P S++L   KY+ TL KG
Sbjct: 255 SAIQAFESILQNTFFNGKSNPTIDPNSSSLLSEKYI-TLDKG 295


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,662,270
Number of Sequences: 5004
Number of extensions: 55473
Number of successful extensions: 118
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)