Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0521
(656 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0264 + 2030080-2031270 154 7e-38
01_03_0090 - 12347165-12348349 151 6e-37
01_02_0051 - 10655867-10657057 149 1e-36
03_05_0046 + 20235380-20235566,20235760-20235998 31 1.1
01_03_0011 + 11630506-11630853 29 4.3
11_01_0600 - 4780579-4780839,4781256-4781324,4781535-4781598,478... 28 5.7
06_01_0692 - 5047162-5047441,5047602-5047726,5048257-5048327,504... 28 5.7
09_06_0061 + 20596360-20596618,20597039-20597158,20597329-205974... 28 7.5
07_03_1533 + 27523811-27524710 28 7.5
07_03_0562 + 19535801-19535865,19535972-19536017,19536125-195362... 28 7.5
02_03_0356 + 18073794-18074052,18074054-18074163 28 7.5
11_01_0407 + 3090880-3092010 27 9.9
>05_01_0264 + 2030080-2031270
Length = 396
Score = 154 bits (373), Expect = 7e-38
Identities = 80/147 (54%), Positives = 96/147 (65%), Gaps = 5/147 (3%)
Frame = +3
Query: 3 IGGPQSDAGLTGRKIIVDTYXXXXXXXXXXXXXKDFTKVDRSAAYAARWVAKSLVKAGLC 182
IGGP DAGLTGRKII+DTY KD TKVDRS AY AR AKS+V +GL
Sbjct: 243 IGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYVARQAAKSIVASGLA 302
Query: 183 RRCMVQVAYAIGVAEPLSITVFDYGTSHKTQQQLLSIVQKNFDLRPGKIVKELNLRA--- 353
RRC+VQV+YAIGV EPLS+ V YGT +++L IV++NFD RPG I+ L+L+
Sbjct: 303 RRCIVQVSYAIGVPEPLSVFVDTYGTGRIPDKEILKIVKENFDFRPGMIIINLDLKKGGN 362
Query: 354 PIYQRTSTYGHFGR--AGFPWESPKPL 428
Y +T+ YGHFGR F WE KPL
Sbjct: 363 GRYLKTAAYGHFGRDDPDFTWEVVKPL 389
>01_03_0090 - 12347165-12348349
Length = 394
Score = 151 bits (365), Expect = 6e-37
Identities = 79/149 (53%), Positives = 96/149 (64%), Gaps = 4/149 (2%)
Frame = +3
Query: 3 IGGPQSDAGLTGRKIIVDTYXXXXXXXXXXXXXKDFTKVDRSAAYAARWVAKSLVKAGLC 182
IGGP DAGLTGRKII+DTY KD TKVDRS AY AR AKS+V +GL
Sbjct: 242 IGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIARQAAKSIVASGLA 301
Query: 183 RRCMVQVAYAIGVAEPLSITVFDYGTSHKTQQQLLSIVQKNFDLRPGKIVKELNLR--AP 356
RRC+VQV+YAIGV EPLS+ V YGT +++L IV++NFD RPG + L+L+
Sbjct: 302 RRCIVQVSYAIGVPEPLSVFVDSYGTGKIPDKEILKIVKENFDFRPGMMTINLDLKRGGN 361
Query: 357 IYQRTSTYGHFGR--AGFPWESPKPLIVE 437
+ +T+ YGHFGR F WE KPL E
Sbjct: 362 RFIKTAAYGHFGREDPDFTWEVVKPLKYE 390
>01_02_0051 - 10655867-10657057
Length = 396
Score = 149 bits (362), Expect = 1e-36
Identities = 80/147 (54%), Positives = 93/147 (63%), Gaps = 5/147 (3%)
Frame = +3
Query: 3 IGGPQSDAGLTGRKIIVDTYXXXXXXXXXXXXXKDFTKVDRSAAYAARWVAKSLVKAGLC 182
IGGP DAGLTGRKII+DTY KD TKVDRS AY AR AKS+V GL
Sbjct: 243 IGGPHGDAGLTGRKIIIDTYGGWGAHGGGAFSGKDPTKVDRSGAYIARQAAKSIVANGLA 302
Query: 183 RRCMVQVAYAIGVAEPLSITVFDYGTSHKTQQQLLSIVQKNFDLRPGKIVKELNLRA--- 353
RRC+VQV+YAIGV EPLS+ V YGT +++L IV +NFD RPG I+ L+L
Sbjct: 303 RRCIVQVSYAIGVPEPLSVFVDTYGTGKIPDREILRIVTENFDFRPGMIIINLDLMRGGN 362
Query: 354 PIYQRTSTYGHFGR--AGFPWESPKPL 428
Y +T+ YGHFGR F WE KPL
Sbjct: 363 GRYLKTAAYGHFGREDPDFTWEVVKPL 389
>03_05_0046 + 20235380-20235566,20235760-20235998
Length = 141
Score = 30.7 bits (66), Expect = 1.1
Identities = 20/50 (40%), Positives = 26/50 (52%)
Frame = +2
Query: 8 RTSVRRGPDGTQNHRGHVWRVGGARRGRFLWQGLHQGRPLRSIRRSMGRQ 157
R S RRG G G RV G G + +G+ +G P R RRS+GR+
Sbjct: 57 RGSRRRGGKGGDRATGGAIRVRG---GNGMVRGMREGAPSRWQRRSVGRR 103
>01_03_0011 + 11630506-11630853
Length = 115
Score = 28.7 bits (61), Expect = 4.3
Identities = 11/16 (68%), Positives = 12/16 (75%)
Frame = +2
Query: 44 NHRGHVWRVGGARRGR 91
NH G VWR+G ARR R
Sbjct: 17 NHHGSVWRLGRARRHR 32
>11_01_0600 -
4780579-4780839,4781256-4781324,4781535-4781598,
4781791-4781919,4782234-4782541
Length = 276
Score = 28.3 bits (60), Expect = 5.7
Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Frame = +2
Query: 5 WRTSVRRGPDGTQNHRGHVWRVGG-ARRGRFLWQGLHQGRPLRSIRRSMGRQVARQGGLV 181
W T V G + RGH R G A G L +G+ GR +RR R+ R+ +
Sbjct: 10 WMTEVAVA--GDELRRGHPQRSPGIADFGDELQRGVRHGRRRTWLRRRARRRERRRRTWL 67
Query: 182 PALHGAGC 205
PA+ C
Sbjct: 68 PAMWSPDC 75
>06_01_0692 -
5047162-5047441,5047602-5047726,5048257-5048327,
5048453-5048834,5049389-5050126
Length = 531
Score = 28.3 bits (60), Expect = 5.7
Identities = 15/31 (48%), Positives = 22/31 (70%), Gaps = 3/31 (9%)
Frame = +1
Query: 307 SIYDRAKSSKS*TSE---HQFIREQVPMDTL 390
+I DR++SSKS S+ HQF R+Q+P D +
Sbjct: 59 TILDRSESSKSNNSDDEAHQFWRKQLPDDII 89
>09_06_0061 +
20596360-20596618,20597039-20597158,20597329-20597462,
20597578-20597730,20597816-20597927,20598022-20598352,
20598524-20598737,20598842-20598931,20599669-20599924,
20600029-20600141,20600733-20600831,20600915-20600980,
20601018-20601167,20601278-20601368,20601710-20601749,
20603888-20605247,20605478-20605507,20605834-20605885,
20606264-20606397,20606513-20606665,20607089-20607202
Length = 1356
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +1
Query: 307 SIYDRAKSSKS*TSEHQFIREQVPMDT 387
S+YD + TS +QF++E++PM+T
Sbjct: 217 SLYDYKNPRELSTSHNQFLKEKLPMNT 243
>07_03_1533 + 27523811-27524710
Length = 299
Score = 27.9 bits (59), Expect = 7.5
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = -2
Query: 580 HWRGSSHIIVKERHRRR 530
H RGS ++V+ RHRRR
Sbjct: 160 HTRGSGGVVVRRRHRRR 176
>07_03_0562 +
19535801-19535865,19535972-19536017,19536125-19536223,
19536588-19536674,19537545-19537613,19537702-19538710,
19539217-19539365,19539453-19540487,19540488-19541003
Length = 1024
Score = 27.9 bits (59), Expect = 7.5
Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Frame = +3
Query: 258 TSHKTQQQLLSIVQKNFDLRPGKIVKELNLRAPIYQRTSTYGHFGRAGFPWESP--KPLI 431
+S Q+ S+ + N +RP + V ++ + R +T + P ESP KP +
Sbjct: 577 SSEANVQRSASMTRNNERIRPTESVNPKDMSLSLLNRITTGNNVVGVPGPLESPEIKPRL 636
Query: 432 VE*LAKPEH*NNVNIPSVYNKH 497
A+P+ + PS++ H
Sbjct: 637 FGVTAEPQQ-RSTEAPSLHENH 657
>02_03_0356 + 18073794-18074052,18074054-18074163
Length = 122
Score = 27.9 bits (59), Expect = 7.5
Identities = 17/47 (36%), Positives = 20/47 (42%)
Frame = -3
Query: 162 ATWRPIERRMLRSGRPW*SPCQRKRPRRAPPTRHTCPR*FCVPSGPR 22
AT R + +S SP P R PPTR T P C+ S R
Sbjct: 46 ATLRSLASACSKSKLTGLSPSAGVSPSRCPPTRSTFPNLNCMRSSKR 92
>11_01_0407 + 3090880-3092010
Length = 376
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +2
Query: 119 RPLRSIRRSMGRQVARQGGLVPALHGAGCLCYWCS*AII 235
R L++I + A +GGLV ++ GCL + + A++
Sbjct: 203 RQLQAIGSGLAAPRAHEGGLVAPVYSMGCLLHLAAWALV 241
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,982,190
Number of Sequences: 37544
Number of extensions: 395522
Number of successful extensions: 1134
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1077
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1130
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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