Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0521
         (656 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46130| Best HMM Match : No HMM Matches (HMM E-Value=.)             207   5e-54
SB_11655| Best HMM Match : No HMM Matches (HMM E-Value=.)             195   3e-50
SB_47946| Best HMM Match : No HMM Matches (HMM E-Value=.)             150   9e-37
SB_16847| Best HMM Match : S-AdoMet_synt_M (HMM E-Value=0)             73   2e-13
SB_20110| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.007
SB_27693| Best HMM Match : Kringle (HMM E-Value=8.4)                   31   1.1  
SB_53563| Best HMM Match : zf-CCHC (HMM E-Value=0.0048)                30   1.9  
SB_7075| Best HMM Match : Hormone_5 (HMM E-Value=2.3)                  29   3.3  
SB_55670| Best HMM Match : zf-C2H2 (HMM E-Value=1.6e-29)               29   4.4  
SB_57949| Best HMM Match : PAN (HMM E-Value=0.13)                      28   5.8  
SB_41712| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_2193| Best HMM Match : Glyco_transf_8 (HMM E-Value=0.00071)         28   7.7  
SB_47113| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_979| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   7.7  

>SB_46130| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 407

 Score =  207 bits (506), Expect = 5e-54
 Identities = 94/142 (66%), Positives = 114/142 (80%)
 Frame = +3

Query: 3   IGGPQSDAGLTGRKIIVDTYXXXXXXXXXXXXXKDFTKVDRSAAYAARWVAKSLVKAGLC 182
           IGGPQ DAGLTGRKIIVDTY             KD+TKVDRSAAYAARW+AKSLV  GLC
Sbjct: 265 IGGPQGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDYTKVDRSAAYAARWIAKSLVSEGLC 324

Query: 183 RRCMVQVAYAIGVAEPLSITVFDYGTSHKTQQQLLSIVQKNFDLRPGKIVKELNLRAPIY 362
           +R +VQ++YAIG+A+PLS+TVF YGTS K++ +LL IV+ NFDLRPGKIVKEL+L+ P+Y
Sbjct: 325 KRVLVQISYAIGIAQPLSVTVFSYGTSKKSEDELLKIVRDNFDLRPGKIVKELDLKKPVY 384

Query: 363 QRTSTYGHFGRAGFPWESPKPL 428
           Q++  YGHF + GF WE+PKPL
Sbjct: 385 QKSCVYGHF-KPGFTWETPKPL 405


>SB_11655| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 428

 Score =  195 bits (475), Expect = 3e-50
 Identities = 91/141 (64%), Positives = 107/141 (75%)
 Frame = +3

Query: 6   GGPQSDAGLTGRKIIVDTYXXXXXXXXXXXXXKDFTKVDRSAAYAARWVAKSLVKAGLCR 185
           GGP  DAGLTGRKIIVDTY             KD TKVDRS AYA RW+AKSLV AGLCR
Sbjct: 287 GGPLGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDVTKVDRSGAYACRWIAKSLVAAGLCR 346

Query: 186 RCMVQVAYAIGVAEPLSITVFDYGTSHKTQQQLLSIVQKNFDLRPGKIVKELNLRAPIYQ 365
           R +VQVAYAIG+AEPLSI+VF YG+ + T +QLL +++ NFDLRPG I+++LNL  PIY+
Sbjct: 347 RVLVQVAYAIGIAEPLSISVFSYGSGNYTDKQLLGVIKDNFDLRPGVIIRDLNLLRPIYK 406

Query: 366 RTSTYGHFGRAGFPWESPKPL 428
            TST+GHF + GFPWE PK L
Sbjct: 407 ATSTFGHF-KPGFPWEEPKKL 426


>SB_47946| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 460

 Score =  150 bits (364), Expect = 9e-37
 Identities = 71/111 (63%), Positives = 86/111 (77%)
 Frame = +3

Query: 3   IGGPQSDAGLTGRKIIVDTYXXXXXXXXXXXXXKDFTKVDRSAAYAARWVAKSLVKAGLC 182
           IGGPQ DAGLTGRKIIVDTY             KD +KVDRSAAYAARW+AKSLV A LC
Sbjct: 196 IGGPQGDAGLTGRKIIVDTYGGWGAHGGGAFSGKDPSKVDRSAAYAARWIAKSLVAAKLC 255

Query: 183 RRCMVQVAYAIGVAEPLSITVFDYGTSHKTQQQLLSIVQKNFDLRPGKIVK 335
            R +VQ++YAIGVAEPLSI+VF YGT ++ +++LL +++ NFDLRPG IV+
Sbjct: 256 HRVLVQLSYAIGVAEPLSISVFTYGTGYRPEEELLEVIKHNFDLRPGVIVR 306


>SB_16847| Best HMM Match : S-AdoMet_synt_M (HMM E-Value=0)
          Length = 192

 Score = 73.3 bits (172), Expect = 2e-13
 Identities = 37/66 (56%), Positives = 43/66 (65%)
 Frame = +3

Query: 3   IGGPQSDAGLTGRKIIVDTYXXXXXXXXXXXXXKDFTKVDRSAAYAARWVAKSLVKAGLC 182
           IGGP  DAGLTGRKIIVDTY             KD +KVDRSAAY  R+VAK++V A L 
Sbjct: 127 IGGPVGDAGLTGRKIIVDTYGGMARHGGGAFSGKDPSKVDRSAAYIGRYVAKNIVAAELA 186

Query: 183 RRCMVQ 200
            +C +Q
Sbjct: 187 DKCEIQ 192


>SB_20110| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 62

 Score = 37.9 bits (84), Expect = 0.007
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +3

Query: 312 LRPGKIVKELNLRAPIYQRTSTYGHFGR 395
           +RP  I + L LR+P+Y  T+ YGH GR
Sbjct: 1   MRPAAIERRLKLRSPMYSETAAYGHMGR 28


>SB_27693| Best HMM Match : Kringle (HMM E-Value=8.4)
          Length = 146

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = -2

Query: 610 GHQICLVSQFHWRG--SSHIIVKERHRRRSALDTMT 509
           G Q+C V Q  +RG  SS +I + RH RR  L   T
Sbjct: 23  GKQLCFVGQLGYRGRWSSSVIDRPRHTRRRELAAAT 58


>SB_53563| Best HMM Match : zf-CCHC (HMM E-Value=0.0048)
          Length = 168

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 18/52 (34%), Positives = 23/52 (44%)
 Frame = +3

Query: 261 SHKTQQQLLSIVQKNFDLRPGKIVKELNLRAPIYQRTSTYGHFGRAGFPWES 416
           +H   Q L+        LR G   KE     P YQ  + YG   R+GFP+ S
Sbjct: 9   THPAAQTLVQASGALKCLRVGHWAKECRSAWPGYQSYAGYGFQNRSGFPYSS 60


>SB_7075| Best HMM Match : Hormone_5 (HMM E-Value=2.3)
          Length = 1259

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 17/35 (48%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
 Frame = -2

Query: 616  CNGHQICLVSQFHWRG--SSHIIVKERHRR-RSAL 521
            C G Q+CLV Q + R   SS +I +  H R RSAL
Sbjct: 969  CPGEQLCLVGQLYHRARWSSSVIDRPLHTRPRSAL 1003


>SB_55670| Best HMM Match : zf-C2H2 (HMM E-Value=1.6e-29)
          Length = 637

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 18/63 (28%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
 Frame = +2

Query: 173 GLVPALHGAGCLCYWCS*AIIDYSL*LWHFT*DS---ATTALHRTKEFRFTTGQNRQRVE 343
           GL P L+G G L  +C     D  + LW     S   + ++   +  + ++TGQN +   
Sbjct: 194 GLSPTLYGKGTLSRYCKFRHHDSGVLLWVSVMSSTQESYSSNSTSSHYPYSTGQNSRPAR 253

Query: 344 PQS 352
           P S
Sbjct: 254 PSS 256


>SB_57949| Best HMM Match : PAN (HMM E-Value=0.13)
          Length = 230

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +1

Query: 436 NDLQNLSIRTM*IFHQYIINTYVCVSLYRGRCVAGVS 546
           NDLQN  ++   I+H+ + N  + +  YR +C+  +S
Sbjct: 8   NDLQNRVLQKETIYHETVTNIRIVIGSYR-QCIKSLS 43


>SB_41712| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 198

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 198 QVAYAIGVAEPLSITVFDYGTSHKTQQQLLS 290
           +V + IG  E    +VFDYGT + T ++  S
Sbjct: 154 RVNHGIGATEANEASVFDYGTVYSTMERYSS 184


>SB_2193| Best HMM Match : Glyco_transf_8 (HMM E-Value=0.00071)
          Length = 482

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +3

Query: 102 KDFTKVDRSAAYAARWVAKSLVKAGLCRRCMVQVAYAIGVAEPLS 236
           +D+ K      Y  +W+ +  +K  LCR  M  +A    +A  LS
Sbjct: 384 RDYIKQWLCRDYIKQWLCRDYIKQWLCRSLMTVLATPCSLAHTLS 428


>SB_47113| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1286

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -1

Query: 218 TNSISNLHHAA-PAQARLDERLGDPSSGVCCGAVDLGEVLARES 90
           TN I     A  PA  RL E+L DP  GV   AV++   LAR++
Sbjct: 97  TNMIRKFPEALRPAFPRLREKLEDPEPGVQSAAVNVICELARKN 140


>SB_979| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 673

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +2

Query: 59  VWRVGGARRGRFLWQGLHQGRPLRSIRR 142
           VW   G  RGRF   G HQ   ++  RR
Sbjct: 621 VWLASGIMRGRFSDNGFHQTEKVKKRRR 648


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,775,661
Number of Sequences: 59808
Number of extensions: 458763
Number of successful extensions: 1653
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1647
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)