Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0519
         (706 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase Cmk2|Schiz...    29   0.65 
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    27   2.6  
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    27   2.6  
SPCC1322.08 |srk1|mkp1|MAPK-activated protein kinase Srk1|Schizo...    26   6.0  
SPBC18H10.20c |||conserved fungal protein|Schizosaccharomyces po...    26   6.0  
SPCC663.10 |||methyltransferase, DUF1613 family |Schizosaccharom...    26   6.0  

>SPAC23A1.06c |cmk2|mkp2|MAPK-activated protein kinase
           Cmk2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 504

 Score = 29.1 bits (62), Expect = 0.65
 Identities = 16/44 (36%), Positives = 20/44 (45%)
 Frame = +3

Query: 66  LPPDKIVLSSDIEALLGMGSSVILAGDLNCKHVRWNSHTTTPNG 197
           L P+K+     +E +   G   IL  D     V WNS T TP G
Sbjct: 212 LEPNKLDEGMFLEGIGAGGIGRILIADFGFSKVVWNSKTATPCG 255


>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +3

Query: 624 LPDDIRELLRAKNTSIRAYDRY 689
           LP D+R+++   N+ IR YD Y
Sbjct: 619 LPLDVRQIIGLANSIIRGYDNY 640


>SPCC1739.11c |cdc11||SIN component scaffold protein
           Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = +3

Query: 609 LHRFKLPDDIRELLRAKNTSIRAYD 683
           L+RF  P DIR L R  N S R  D
Sbjct: 809 LNRFNRPPDIRRLKRLVNFSFRTQD 833


>SPCC1322.08 |srk1|mkp1|MAPK-activated protein kinase
           Srk1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 580

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
 Frame = +3

Query: 72  PDKIVLSSDIEALLGMGSSVI---LAGDLNCKHVRWNSHTTTPNG 197
           PDK+    + E + G+G+  I      D     V W+SHT TP G
Sbjct: 284 PDKV---DEGEFIPGVGAGTIGRIRLADFGLSKVVWDSHTQTPCG 325


>SPBC18H10.20c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 361

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 144 RLPE*QSFPCRAAPRYHCLERSYPVEDKR 58
           RL E   F C+   R+  L +  P+E+KR
Sbjct: 223 RLEEHMQFSCQPCERHRDLVKPRPIEEKR 251


>SPCC663.10 |||methyltransferase, DUF1613 family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 502

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 20/67 (29%), Positives = 29/67 (43%)
 Frame = +3

Query: 21  ISLTGHAPIVIASVYLPPDKIVLSSDIEALLGMGSSVILAGDLNCKHVRWNSHTTTPNGR 200
           I L  H P   +SV +  D I+ S + +++L    SV    D   +  RW      P   
Sbjct: 52  IELVYH-PERTSSVIMRTDIILDSQEDDSILNKQKSVFENLDERYQISRWIDRRIIPRNT 110

Query: 201 RLDALVD 221
            LDA +D
Sbjct: 111 NLDATMD 117


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,657,369
Number of Sequences: 5004
Number of extensions: 48838
Number of successful extensions: 134
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)