Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0519
         (706 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_03_0058 + 11950668-11950701,11951068-11951106,11951586-119519...    29   4.8  
06_01_0474 - 3362734-3362827,3363179-3363366,3363458-3363700,336...    29   4.8  
03_06_0614 - 35099225-35099461,35099545-35099694,35099919-351000...    29   4.8  
08_01_0867 + 8458570-8459168,8460128-8460313,8462684-8463167           28   6.3  
05_01_0460 - 3644229-3644420,3644623-3644865,3644959-3645237,364...    28   8.3  

>09_03_0058 +
           11950668-11950701,11951068-11951106,11951586-11951982,
           11952016-11952314,11953743-11956795
          Length = 1273

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 18/77 (23%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
 Frame = +3

Query: 21  ISLTGHAPIV-IASVYLPPDKIVLSSDIEALLGMGSSVILAGDLNCKHVRWNSHTTTPNG 197
           I L+G   I+ ++  ++PP  +  ++ ++ALL  G   ++ G++    +R   H T    
Sbjct: 170 IELSGPLEILSLSGAFMPPPSLANATGLKALLAGGQGQVIGGNV-VGALRARGHVTI--- 225

Query: 198 RRLDALVDDLAFDIVAP 248
             L A+V ++ ++ ++P
Sbjct: 226 --LAAVVSNVTYECLSP 240


>06_01_0474 -
           3362734-3362827,3363179-3363366,3363458-3363700,
           3363820-3364098,3364189-3364386,3364475-3365110,
           3365209-3365463,3365579-3365685,3365770-3369566,
           3369677-3370166,3370918-3371308,3371481-3371573,
           3371687-3371810,3372544-3372791
          Length = 2380

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = +3

Query: 540 DILTSHITST--LDRSSKQVVAEDFLHRFKLPDDIRELLR 653
           D L + ITST  +DR  ++   ED    F+LPD +  LL+
Sbjct: 364 DPLINPITSTNKVDRRERRTTEEDEDEDFRLPDGVEPLLK 403


>03_06_0614 -
           35099225-35099461,35099545-35099694,35099919-35100066,
           35100152-35100231,35100428-35100594,35100692-35100940,
           35101025-35102310,35102423-35102544,35102946-35103272
          Length = 921

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/31 (41%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = -3

Query: 464 QADAQRVPIHHSPRDGNG-IGSATELHNDGT 375
           Q   + +P+H  PRDG G  G   E H+ GT
Sbjct: 212 QCKEEPLPLHEPPRDGGGSAGEEEEEHDVGT 242


>08_01_0867 + 8458570-8459168,8460128-8460313,8462684-8463167
          Length = 422

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +3

Query: 168 WNSHTTTPNGRRLDALVDD 224
           W SH T   GRRLDA++ D
Sbjct: 395 WTSHMTPEMGRRLDAILRD 413


>05_01_0460 -
           3644229-3644420,3644623-3644865,3644959-3645237,
           3645328-3645525,3645614-3646249,3646352-3646606,
           3646718-3646824,3646909-3650705,3650816-3651305,
           3652043-3652433,3652621-3652713,3652818-3652941,
           3653871-3654118
          Length = 2350

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
 Frame = +3

Query: 540 DILTSHITST--LDRSSKQVVAEDFLHRFKLPDDIRELLR 653
           D L + ITST  +DR  ++ + ED    F LPD +  LL+
Sbjct: 364 DPLINPITSTSKVDRRERRTIEEDEDEDFCLPDGVEPLLK 403


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,771,455
Number of Sequences: 37544
Number of extensions: 377389
Number of successful extensions: 959
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 959
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)