Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0519
(706 letters)
Database: mosquito
2352 sequences; 563,979 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles ... 49 1e-07
AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcript... 44 6e-06
AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcript... 43 1e-05
AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcript... 42 2e-05
AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcript... 40 6e-05
AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcript... 39 2e-04
AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcript... 38 3e-04
AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcript... 36 0.002
AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcript... 33 0.007
M93690-2|AAA29363.1| 1212|Anopheles gambiae unknown protein. 28 0.25
AB090814-2|BAC57904.1| 1049|Anopheles gambiae reverse transcript... 28 0.33
AB090818-2|BAC57912.1| 988|Anopheles gambiae reverse transcript... 27 0.57
AB090815-2|BAC57906.1| 973|Anopheles gambiae reverse transcript... 23 7.1
AY344833-1|AAR05804.1| 334|Anopheles gambiae ICHIT protein. 23 9.4
>M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles
gambiae RT2 retroposon. ).
Length = 1222
Score = 49.2 bits (112), Expect = 1e-07
Identities = 37/129 (28%), Positives = 56/129 (43%), Gaps = 6/129 (4%)
Frame = +3
Query: 45 IVIASVYLPPDKIVLSSD--IEALLGMGSS---VILAGDLNCKHVRWNSHTTTPNGRRLD 209
+V S Y PP + + +EA+ G S V++AGD N +H W S T G L
Sbjct: 96 VVFISCYAPPSLNLAEFERFLEAIELEGFSHPQVVVAGDFNARHEEWGSPRTCDRGEELH 155
Query: 210 ALVDDLAFDIVAPLTPTHYPLNIAHRPDILDIALLKNVTLRLHS-IEVVSELDSDHRPVV 386
+V+ L ++ + N P I+D+A R + + S SDHR V+
Sbjct: 156 GMVEQLGLIVINQGREYTFVGNGVALPSIVDVAFASPSIARPDTWVVSTSYTASDHRYVL 215
Query: 387 MKLGRAPDS 413
+G P S
Sbjct: 216 YTVGGTPPS 224
>AB090820-2|BAC57916.1| 1222|Anopheles gambiae reverse transcriptase
protein.
Length = 1222
Score = 43.6 bits (98), Expect = 6e-06
Identities = 22/72 (30%), Positives = 35/72 (48%)
Frame = +3
Query: 129 VILAGDLNCKHVRWNSHTTTPNGRRLDALVDDLAFDIVAPLTPTHYPLNIAHRPDILDIA 308
V+ AGDLN H W S T G + LVD L +++ T + N RP ++D+A
Sbjct: 116 VVFAGDLNAWHTAWGSCRTNAKGEAVVQLVDSLGLEVLNTGTAPTFLGNGVARPSVVDVA 175
Query: 309 LLKNVTLRLHSI 344
+ +++I
Sbjct: 176 FASSSIAGVNTI 187
>AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcriptase
protein.
Length = 1154
Score = 42.7 bits (96), Expect = 1e-05
Identities = 35/121 (28%), Positives = 55/121 (45%), Gaps = 8/121 (6%)
Frame = +3
Query: 39 APIVIASVYLPP-------DKIVLSSDIEALLGMGSSVILAGDLNCKHVRWNSHTTTPNG 197
A I SVY PP ++++ + ++EA S V++AGD N H W S G
Sbjct: 83 AGIDFISVYAPPSLSPQEYERLLEAVELEA--SSHSHVVIAGDFNAWHTEWGSRRNNLRG 140
Query: 198 RRLDALVDDLAFDIVAPLTPTHYPLNIAHRPDILDIALLKNVTLRLHSI-EVVSELDSDH 374
L +V+ L I+ + + A RP ++D+ +L LH EV+ SDH
Sbjct: 141 EELLQMVEVLGLSILNNGSAPTFIGRGAARPSVIDVT-FATPSLVLHDTWEVLDFARSDH 199
Query: 375 R 377
+
Sbjct: 200 Q 200
>AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcriptase
protein.
Length = 1099
Score = 41.5 bits (93), Expect = 2e-05
Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 1/93 (1%)
Frame = +3
Query: 123 SSVILAGDLNCKHVRWNSHTTTPNGRRLDALVDDLAFDIVAPLTPTHYPLNIAHRPDILD 302
S V++AGD N HV W S + G L + + L ++ T + + N A I+D
Sbjct: 117 SQVVIAGDFNAWHVEWGSERNSEKGEELLSAIQQLDLVVLNQGTTSTFDGNGAATASIVD 176
Query: 303 IALLKNVTLRLHSIEVVSELD-SDHRPVVMKLG 398
+A + + V + SDHR + +G
Sbjct: 177 VAFATPTIAQPGTWNVCGDYSYSDHRYITYTVG 209
>AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcriptase
protein.
Length = 1201
Score = 40.3 bits (90), Expect = 6e-05
Identities = 37/135 (27%), Positives = 55/135 (40%), Gaps = 8/135 (5%)
Frame = +3
Query: 39 APIVIASVYLPPDKIVLSSDIEALLGM-------GSSVILAGDLNCKHVRWNSHTTTPNG 197
A I SVY PP + + + E LLG S V++AGD N H W S G
Sbjct: 146 AGITFISVYAPPS--LSAHEFERLLGAIELEAASHSRVVVAGDFNAWHEEWGSGRNGQRG 203
Query: 198 RRLDALVDDLAFDIV-APLTPTHYPLNIAHRPDILDIALLKNVTLRLHSIEVVSELDSDH 374
L V+ L I+ PT A ++D++ +R + V+ SDH
Sbjct: 204 IELLQTVETLGLSILNQGRKPTFIGRGFA-ASSVIDVSFASREIVRPDTWSVIPFSRSDH 262
Query: 375 RPVVMKLGRAPDSVP 419
+ ++ + PD P
Sbjct: 263 ELIAFEV-KQPDENP 276
>AB090824-2|BAC57924.1| 1248|Anopheles gambiae reverse transcriptase
protein.
Length = 1248
Score = 38.7 bits (86), Expect = 2e-04
Identities = 23/70 (32%), Positives = 34/70 (48%)
Frame = +3
Query: 99 IEALLGMGSSVILAGDLNCKHVRWNSHTTTPNGRRLDALVDDLAFDIVAPLTPTHYPLNI 278
I+ L+ V+LAGD N H W S T P G L LV+ L +++ T +
Sbjct: 106 IDILIRGHPRVLLAGDFNAWHTAWGSERTKPKGIALLQLVNGLGLEVLNIGTSHTFRGCG 165
Query: 279 AHRPDILDIA 308
+ RP +D+A
Sbjct: 166 SARPSRIDVA 175
>AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcriptase
protein.
Length = 1168
Score = 37.9 bits (84), Expect = 3e-04
Identities = 19/52 (36%), Positives = 27/52 (51%)
Frame = +3
Query: 72 PDKIVLSSDIEALLGMGSSVILAGDLNCKHVRWNSHTTTPNGRRLDALVDDL 227
P+ + I+ ++ S V+LAGD N H+ W S T P G L L D+L
Sbjct: 98 PEFRSIMEKIDLIVRGCSRVLLAGDFNAMHLDWGSSRTCPKGLELLQLADNL 149
>AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcriptase
protein.
Length = 1173
Score = 35.5 bits (78), Expect = 0.002
Identities = 21/94 (22%), Positives = 36/94 (38%)
Frame = +3
Query: 123 SSVILAGDLNCKHVRWNSHTTTPNGRRLDALVDDLAFDIVAPLTPTHYPLNIAHRPDILD 302
S V++ GD N H W S + G L L+ + ++ + A ++D
Sbjct: 136 SQVVIDGDFNAWHTEWGSARNSQRGEDLLQLIQSVQLQVINSGNEPTFIGRGAATSSVID 195
Query: 303 IALLKNVTLRLHSIEVVSELDSDHRPVVMKLGRA 404
+ R + EV SDH+ + +G A
Sbjct: 196 VCFATPSIARPETWEVHEFARSDHQLITYSVGEA 229
>AB090822-2|BAC57920.1| 1173|Anopheles gambiae reverse transcriptase
protein.
Length = 1173
Score = 33.5 bits (73), Expect = 0.007
Identities = 28/97 (28%), Positives = 42/97 (43%), Gaps = 2/97 (2%)
Frame = +3
Query: 99 IEALLGMGSSVILAGDLNCKHVRWNSHTTTPNGRRLDALVDDLAFDIV-APLTPTHYPLN 275
+E + +V+L GD N H W S T G L V+ L ++ T T
Sbjct: 106 VEIEVSAHPNVVLGGDFNAWHEAWGSARTKRKGEELLNTVEQLGLIVLNRGNTSTFTGRG 165
Query: 276 IAHRPDILDIALLKNVTLRLHSIEVV-SELDSDHRPV 383
IA ++D+ +R ++ EV+ S SDHR V
Sbjct: 166 IAGE-SVIDVTFASPSIVRYNTWEVLKSYWYSDHRYV 201
>M93690-2|AAA29363.1| 1212|Anopheles gambiae unknown protein.
Length = 1212
Score = 28.3 bits (60), Expect = 0.25
Identities = 30/127 (23%), Positives = 49/127 (38%), Gaps = 7/127 (5%)
Frame = +3
Query: 45 IVIASVYLPPD--KIVLSSDIEALLGMGSS---VILAGDLNCKHVRWNSHTTTPNGRRLD 209
I S Y PP + + +EA+ S V++AGD N H W S + G L
Sbjct: 142 ITFLSCYAPPSLSREGFAEFVEAIELEAQSHPQVVVAGDFNAWHEEWGSRRSNERGEVLL 201
Query: 210 ALVDDLAFDIVAPLTPTHYPLNIAHRPDILDIALLKNVTLRLHSIEVVSELD--SDHRPV 383
L ++ + N ++D+ + ++ S +V D SDHR +
Sbjct: 202 EASQQLGLLLMNRGNVATFVGNGVATASVVDVTFASS-SIAQPSTWLVRNTDTRSDHRYI 260
Query: 384 VMKLGRA 404
+G A
Sbjct: 261 TYSVGPA 267
>AB090814-2|BAC57904.1| 1049|Anopheles gambiae reverse transcriptase
protein.
Length = 1049
Score = 27.9 bits (59), Expect = 0.33
Identities = 31/120 (25%), Positives = 46/120 (38%), Gaps = 7/120 (5%)
Frame = +3
Query: 45 IVIASVYLPP----DKI-VLSSDIEALLGMGSSVILAGDLNCKHVRWNSHTTTPNGRRLD 209
+ S Y PP ++ V+ ++ A L +++AGD N V W S T G D
Sbjct: 80 VFFCSCYAPPSWELERFHVMLDNLVAELDGHRPLVIAGDFNAWAVEWGSKRTNSRG---D 136
Query: 210 ALVDDLA-FDIVAPLTPTHYPLNIAHRPDILDIALLKNVTLRLHSIEVVSELD-SDHRPV 383
A+++ A + T N R I+DI + V L SDH V
Sbjct: 137 AVLESFARLGVTLGNAGTTPTFNRNKRTSIVDITFCSTTLSERLNWRVSDALTLSDHNVV 196
>AB090818-2|BAC57912.1| 988|Anopheles gambiae reverse transcriptase
protein.
Length = 988
Score = 27.1 bits (57), Expect = 0.57
Identities = 31/134 (23%), Positives = 52/134 (38%), Gaps = 13/134 (9%)
Frame = +3
Query: 45 IVIASVYLPPDKIVLS--------SDIEALLGMGSSVILAGDLNCKHVRWNSHTTTPNGR 200
IV SVYLPP L+ ++I ++L ++ G +N W +G
Sbjct: 83 IVFCSVYLPPVGSDLTVEEYKRKWTEIVSMLPRNRDTVIGGYVNVWSGAWGMERRPNDGE 142
Query: 201 RLD--ALVDDLAFDIVAPLTPTHYP---LNIAHRPDILDIALLKNVTLRLHSIEVVSELD 365
R+ +V D A + L + R I+D++ + ++ V E
Sbjct: 143 RVSRGGVVMDAAAALGLVLLNQGNQSTWIGANGRNSIVDVSFCSPSLVGDNNWRVCDETP 202
Query: 366 SDHRPVVMKLGRAP 407
SDH + +GR P
Sbjct: 203 SDHNTIKFVVGRVP 216
>AB090815-2|BAC57906.1| 973|Anopheles gambiae reverse transcriptase
protein.
Length = 973
Score = 23.4 bits (48), Expect = 7.1
Identities = 8/23 (34%), Positives = 12/23 (52%)
Frame = +3
Query: 129 VILAGDLNCKHVRWNSHTTTPNG 197
+I++GD N W S +T G
Sbjct: 115 IIISGDFNAWATEWGSKSTNARG 137
>AY344833-1|AAR05804.1| 334|Anopheles gambiae ICHIT protein.
Length = 334
Score = 23.0 bits (47), Expect = 9.4
Identities = 10/30 (33%), Positives = 14/30 (46%)
Frame = -1
Query: 454 PSVCQSTTVLVTGTESGARPSFITTGRWSE 365
P +TTV T + P+ TT WS+
Sbjct: 180 PPTTTTTTVWTDSTATTTTPASTTTTTWSD 209
Database: mosquito
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 563,979
Number of sequences in database: 2352
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 686,981
Number of Sequences: 2352
Number of extensions: 13380
Number of successful extensions: 37
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 71922660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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