Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0519
         (706 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   1.2  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   2.8  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                22   6.5  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   8.6  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +2

Query: 497 PGLYPVSSGYR*SHRHLNVTHHLDIR*VIEASCSGGLPSPLQI 625
           PG   +   Y+   +HLN  H LD R   +A     + S L+I
Sbjct: 286 PGCEVICEDYQAFLKHLNTEHTLDDRSTAQARVRMQVVSQLEI 328


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -1

Query: 415 TESGARPSFITTGRWSESNSETTSIE 338
           T++G  P+F+T   W E  + T S+E
Sbjct: 502 TQTGTGPAFLTIKEWIERGT-TKSME 526


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +2

Query: 272 KYRASPGYTRHSVIKKRNSALTLD 343
           K+  +PGYT   VIK+       D
Sbjct: 213 KFYGTPGYTAPEVIKQNRPTPAAD 236


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = +1

Query: 619 SNCPTILGNSLELRTPRSAPTIGI 690
           S+C T+   + E+ TP   P +G+
Sbjct: 569 SDCDTLEYRNGEVTTPLFTPAVGV 592


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,727
Number of Sequences: 438
Number of extensions: 3560
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)