Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0519
         (706 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g03260.1 68416.m00322 homeobox-leucine zipper family protein ...    28   6.9  
At1g14610.1 68414.m01737 valyl-tRNA synthetase / valine--tRNA li...    28   6.9  

>At3g03260.1 68416.m00322 homeobox-leucine zipper family protein /
           lipid-binding START domain-containing protein similar to
           L1 specific homeobox gene ATML1/ovule-specific homeobox
           protein A20, GB:CAB36819
          Length = 699

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -2

Query: 486 AMVDQIQSS*CPACANPP 433
           AM+D ++S  CPAC  PP
Sbjct: 103 AMLDALKSVLCPACGGPP 120


>At1g14610.1 68414.m01737 valyl-tRNA synthetase / valine--tRNA
           ligase (VALRS) nearly identical to SP|P93736 Valyl-tRNA
           synthetase (EC 6.1.1.9) (Valine--tRNA ligase) (ValRS)
           {Arabidopsis thaliana}
          Length = 1108

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
 Frame = +3

Query: 81  IVLSSDIEALLGMGSSVILAGDLNCKHVRWNSHTTTPNGRRLDALVDDLAFDI-----VA 245
           IV ++ +E +LG  +  I   D   KH+         NGR+L  + D +  D        
Sbjct: 363 IVATTRVETMLGDTAIAIHPDDARYKHLHGKFAVHPFNGRKLPIICDGILVDPNFGTGCV 422

Query: 246 PLTPTHYP 269
            +TP H P
Sbjct: 423 KITPAHDP 430


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,299,823
Number of Sequences: 28952
Number of extensions: 272701
Number of successful extensions: 655
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 646
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)