Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0518
(713 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb... 69 7e-13
SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces po... 59 7e-10
SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual 51 2e-07
SPBC31F10.07 |||cortical component Lsb5 |Schizosaccharomyces pom... 48 1e-06
SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual 46 4e-06
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 27 2.0
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 27 2.0
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 27 2.0
SPAC630.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 2.7
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom... 26 6.1
SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces pombe... 26 6.1
SPAC4D7.08c |ade4|min13, aza1|amidophosphoribosyltransferase |Sc... 26 6.1
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 25 8.1
SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces pombe... 25 8.1
SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak... 25 8.1
>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
membrane proteins, ESCRT 0 complex|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 610
Score = 68.9 bits (161), Expect = 7e-13
Identities = 37/89 (41%), Positives = 53/89 (59%), Gaps = 2/89 (2%)
Frame = +3
Query: 258 FGTSSPFDQDVERATSENNT--SEEWGLIMEICDRAGASSTSAKECLRAVMRRLAHPDPH 431
+ ++S F D+E+ATSE SEE L +EI D+ + S K +R + R+ H +P+
Sbjct: 5 WNSNSQFASDIEKATSETLPAGSEEISLYLEISDQIRSKSVDPKFAMRILKSRIDHSNPN 64
Query: 432 VQVHAATLLDACVANCGRFFHLEVASRDF 518
VQ+ A L D CV N G F LE+ASR+F
Sbjct: 65 VQIMALKLTDTCVKNGGSGFLLEIASREF 93
>SPBC1734.08 |hse1||STAM like protein Hse1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 373
Score = 58.8 bits (136), Expect = 7e-10
Identities = 36/129 (27%), Positives = 63/129 (48%), Gaps = 3/129 (2%)
Frame = +3
Query: 261 GTSSPFDQDVERATSENNTSEEWGLIMEICDRAGASSTS-AKECLRAVMRRLAHPDPHVQ 437
G + + + +AT E NT E+W +IM+ CD+ ++S + ++ + +RL + ++Q
Sbjct: 4 GKPNSIETLILQATDEKNTKEKWDVIMDACDQLSSTSGDVGRNSIKFLNKRLDTANANIQ 63
Query: 438 VHAATLLDACVANCGRFFHLEVASRDFETEFRRLL--SRAQPPVXXXXXXXXXKWAEGEF 611
+ A TL DA V NC E++SR F ++ S V +WAE
Sbjct: 64 LLALTLTDAIVKNCKTSIVREISSRTFTDSLLKIASDSTTHNRVRSRIAVLVNEWAE-IM 122
Query: 612 RDDPQLDLI 638
+ DP + L+
Sbjct: 123 KKDPNMSLM 131
>SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual
Length = 510
Score = 50.8 bits (116), Expect = 2e-07
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 1/90 (1%)
Frame = +3
Query: 264 TSSPFDQDVERATSENNTSEEWGLIMEICDRAGASS-TSAKECLRAVMRRLAHPDPHVQV 440
+S + +++AT + N L +EI D + +E +++R+ +P V
Sbjct: 3 SSQTLSKYIDKATDQFNLEPNLALNIEIADLINEKKGNTPREAALLILKRVNSANPTVSY 62
Query: 441 HAATLLDACVANCGRFFHLEVASRDFETEF 530
A LLD CV NCG FH ++AS +F F
Sbjct: 63 LALHLLDICVKNCGYPFHFQIASEEFLNGF 92
>SPBC31F10.07 |||cortical component Lsb5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 304
Score = 48.0 bits (109), Expect = 1e-06
Identities = 32/143 (22%), Positives = 62/143 (43%), Gaps = 5/143 (3%)
Frame = +3
Query: 249 MGIFGTSSPFDQD---VERATSENNTSEEWGLIMEICDRAGASSTSAKECLRAVMRRLAH 419
MGIF + P ++R TS + E+ I+++ + + T +E R + ++L +
Sbjct: 1 MGIFSETVPITAVTTYIDRLTSRDTDDEDLSGIVQLSEAVNLTVTGPREASRTLRKKLKY 60
Query: 420 PDPHVQVHAATLLDACVANCGRFFHLEVASRDFETEFRRLLSRAQ--PPVXXXXXXXXXK 593
PH QV A +L A + N G F + E + + ++ PV
Sbjct: 61 STPHEQVRALVILQALIENAGSHFLQNFSDEKLEDRMLQCATNSEYSKPVRKRAIHMIKL 120
Query: 594 WAEGEFRDDPQLDLIPALHARLP 662
W ++ + ++ + +L +RLP
Sbjct: 121 W-HNDYSNVRGMESMSSLVSRLP 142
>SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 533
Score = 46.4 bits (105), Expect = 4e-06
Identities = 26/91 (28%), Positives = 44/91 (48%), Gaps = 1/91 (1%)
Frame = +3
Query: 288 VERATSENNTSEEWGLIMEICDRAGASSTSA-KECLRAVMRRLAHPDPHVQVHAATLLDA 464
++ AT + + ++I D + + +E A++R++ +P V A LLD
Sbjct: 12 IQNATEPYAFEPDLAVNLDIADLINQTGGNLPREAAFAIVRKVNDRNPTVAYLALNLLDI 71
Query: 465 CVANCGRFFHLEVASRDFETEFRRLLSRAQP 557
CV NCG F L++AS++F E R P
Sbjct: 72 CVKNCGYAFRLQIASKEFLNELVRRFPERPP 102
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 27.5 bits (58), Expect = 2.0
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = +3
Query: 402 MRRLAHPDPHVQVHAATLLDACVANCGRFFHLEVASRDFETEFRRLLSRAQPPV 563
++RL+ DP V + + VA G HLE+ +D + + + + PPV
Sbjct: 508 LKRLSKSDPCVLCTTSESGEHIVAGAGEL-HLEICLKDLQEDHAGIPLKISPPV 560
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 27.5 bits (58), Expect = 2.0
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = +3
Query: 402 MRRLAHPDPHVQVHAATLLDACVANCGRFFHLEVASRDFETEFRRLLSRAQPPV 563
++RL+ DP V + + VA G HLE+ +D + + + + PPV
Sbjct: 508 LKRLSKSDPCVLCTTSESGEHIVAGAGEL-HLEICLKDLQEDHAGIPLKISPPV 560
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 27.5 bits (58), Expect = 2.0
Identities = 17/61 (27%), Positives = 28/61 (45%)
Frame = +1
Query: 418 IPTHTYRFTPPHCSTPALQIVVVSSTWKSPRETSRPSSGACCLARSLLSPLVSAPCSASG 597
+PT T + STP +S+ S ++++ S +A S L P S+P + S
Sbjct: 263 VPTQTIDSSSFTSSTPVSLTSSSTSSSGSSQDSTTIDSTPSTIATSTLQPTTSSPITTSA 322
Query: 598 P 600
P
Sbjct: 323 P 323
>SPAC630.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 430
Score = 27.1 bits (57), Expect = 2.7
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 8/52 (15%)
Frame = +2
Query: 383 GVSPCRHAALGASRPTRTGSRRHTARRLR----C----KLWSFLPPGSRLAR 514
GVS C++AA GAS P + A++L C KLW+ P S L +
Sbjct: 234 GVSHCKYAAAGASYPLPIPASGLLAQKLAIGLLCKDIIKLWNLCPESSILTK 285
>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 772
Score = 25.8 bits (54), Expect = 6.1
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Frame = +1
Query: 448 PHCSTPALQIVVVSSTWKSPRET---SRPSSGACCLARSLLSPLVS 576
P CSTP++ VS+T + ET S +S + RS LS L+S
Sbjct: 281 PRCSTPSVSSTFVSATSEPEVETYSVSTKNSSSNKNLRSSLSKLLS 326
>SPACUNK4.12c |mug138||metallopeptidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 969
Score = 25.8 bits (54), Expect = 6.1
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = -2
Query: 307 SLVARSTS*SKGEEVPNIPILLTKKHLLDYMLLIKIL 197
SL+A + S ++ ++ + LT++ L DY +IKIL
Sbjct: 318 SLIAFNVSITEDADIIVVSTFLTEEGLTDYQRVIKIL 354
>SPAC4D7.08c |ade4|min13, aza1|amidophosphoribosyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 533
Score = 25.8 bits (54), Expect = 6.1
Identities = 15/33 (45%), Positives = 19/33 (57%)
Frame = -2
Query: 397 ARRHSFALVEDAPARSHISMISPHSSLVLFSLV 299
AR+HSFA E+ A IS+ + HS V F V
Sbjct: 502 ARKHSFAEDEEREAPEDISLHNTHSD-VTFDFV 533
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 25.4 bits (53), Expect = 8.1
Identities = 19/59 (32%), Positives = 25/59 (42%)
Frame = +3
Query: 342 EICDRAGASSTSAKECLRAVMRRLAHPDPHVQVHAATLLDACVANCGRFFHLEVASRDF 518
E C +A SS S + LRA+ P + LD V NC +F H + DF
Sbjct: 1573 EACRQALTSSKSVRTKLRAISTIQRFPVSEW----VSKLDTHVRNCIKFSHKQNLEEDF 1627
>SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 371
Score = 25.4 bits (53), Expect = 8.1
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +3
Query: 258 FGTSSPFDQDVERATSENNTSEEWGLIMEI 347
FG++ P D++ + T+ +NTS + L +I
Sbjct: 331 FGSTEPIDEEEKSKTASDNTSLQTSLFGKI 360
>SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 708
Score = 25.4 bits (53), Expect = 8.1
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 1/87 (1%)
Frame = -1
Query: 353 ITYLHDQSPLLAGVIFTRCAFNILIKRRGSAKYPHF-VNKKTST*LYVIDKNIK*FLILK 177
+TYLH + +L R K P F +++K Y+ LI
Sbjct: 546 VTYLHRILNAIKETYSGYLLLTVLCMRLNIIKTPSFTLDEKIQESYYMAHYRP---LINL 602
Query: 176 SE*NRILQTKISCFMKNLRNKNTDYII 96
+ +L+++ C +KNL+N +TD +I
Sbjct: 603 RQPKPLLRSEADCIIKNLQNFSTDDLI 629
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,439,753
Number of Sequences: 5004
Number of extensions: 48049
Number of successful extensions: 144
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -