Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0518
(713 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0907 + 7128397-7128497,7129944-7130022,7130470-7130568,713... 73 2e-13
05_05_0201 + 23206859-23206998,23207858-23207936,23208121-232082... 71 9e-13
01_06_1193 - 35306608-35306777,35306869-35306890,35306988-353069... 68 6e-12
02_02_0414 + 9972157-9972257,9972925-9973003,9973657-9973755,997... 68 9e-12
05_03_0582 - 15738503-15739301,15739385-15739642,15740585-157406... 66 2e-11
02_05_0402 + 28687597-28687671,28688123-28688235,28688927-286894... 63 2e-10
06_02_0206 + 13005863-13005966,13006918-13007080,13008534-130086... 50 1e-09
10_08_1044 + 22532596-22533114,22533425-22533688,22533926-22534306 57 1e-08
08_01_0063 + 439640-439740,440067-440145,440586-440684,440767-44... 45 5e-05
11_01_0620 - 4964263-4965052,4965578-4965663,4966332-4966413,496... 33 0.17
12_02_0912 - 24238659-24238897,24239353-24239462,24239548-242397... 31 0.91
01_07_0178 + 41810795-41811409 29 4.8
12_02_0735 - 22636835-22639502,22639755-22640734 28 8.5
08_02_0311 - 15635165-15635590,15635777-15638698 28 8.5
06_01_1013 - 7931756-7935109 28 8.5
01_07_0306 + 42638683-42638990,42639074-42639314,42639935-426402... 28 8.5
01_05_0351 + 21269339-21269527,21269758-21269961 28 8.5
>01_01_0907 +
7128397-7128497,7129944-7130022,7130470-7130568,
7130654-7130767,7130960-7131102,7131716-7131797,
7132425-7132510,7132879-7133112,7134684-7135162,
7135309-7136027
Length = 711
Score = 73.3 bits (172), Expect = 2e-13
Identities = 32/87 (36%), Positives = 51/87 (58%)
Frame = +3
Query: 288 VERATSENNTSEEWGLIMEICDRAGASSTSAKECLRAVMRRLAHPDPHVQVHAATLLDAC 467
V+RATS+ +W MEICD +K+ ++A+ +R+ H +P VQ+ A TLL+
Sbjct: 6 VDRATSDMLIGPDWAKNMEICDICNRDPGQSKDVVKALKKRIGHKNPKVQILALTLLETA 65
Query: 468 VANCGRFFHLEVASRDFETEFRRLLSR 548
+ NCG FH+ VA RD E +++ +
Sbjct: 66 IKNCGDIFHMHVAERDVLHEMVKIVKK 92
>05_05_0201 +
23206859-23206998,23207858-23207936,23208121-23208219,
23208561-23208674,23208762-23208910,23209010-23209091,
23209170-23209255,23209520-23209750,23209830-23210727
Length = 625
Score = 70.9 bits (166), Expect = 9e-13
Identities = 32/92 (34%), Positives = 48/92 (52%)
Frame = +3
Query: 273 PFDQDVERATSENNTSEEWGLIMEICDRAGASSTSAKECLRAVMRRLAHPDPHVQVHAAT 452
P V++ATS +W + +EICD A K+ ++AV +RL H DP VQ T
Sbjct: 14 PASTRVDKATSHLLQGPDWAINLEICDTLNADRWQTKDVVKAVKKRLQHKDPRVQFFTLT 73
Query: 453 LLDACVANCGRFFHLEVASRDFETEFRRLLSR 548
LL+ + NCG + H EV + E R++ +
Sbjct: 74 LLETMMKNCGEYVHFEVVEQHILQEMVRIVQK 105
>01_06_1193 -
35306608-35306777,35306869-35306890,35306988-35306996,
35307107-35307115,35307470-35307491,35307981-35308784,
35308861-35309088,35309250-35309335,35309449-35309530,
35309630-35309778,35309992-35310105,35310961-35311059,
35311243-35311321,35311873-35312021
Length = 673
Score = 68.1 bits (159), Expect = 6e-12
Identities = 32/87 (36%), Positives = 50/87 (57%)
Frame = +3
Query: 288 VERATSENNTSEEWGLIMEICDRAGASSTSAKECLRAVMRRLAHPDPHVQVHAATLLDAC 467
VE+ATS +W + +EICD A K+ ++AV +RL + DP VQ +A TLL+
Sbjct: 22 VEKATSHLLMGPDWAVNLEICDIINADVWQTKDVVKAVKKRLQNKDPKVQFYALTLLETM 81
Query: 468 VANCGRFFHLEVASRDFETEFRRLLSR 548
+ NCG + LEVA + E +++ +
Sbjct: 82 MKNCGEYVQLEVAEQHVLQEMVKIIQK 108
>02_02_0414 +
9972157-9972257,9972925-9973003,9973657-9973755,
9973848-9973913,9974225-9974376,9974503-9974584,
9974696-9974781,9974919-9975098,9975320-9975717,
9976192-9976790,9977141-9977239
Length = 646
Score = 67.7 bits (158), Expect = 9e-12
Identities = 28/87 (32%), Positives = 52/87 (59%)
Frame = +3
Query: 288 VERATSENNTSEEWGLIMEICDRAGASSTSAKECLRAVMRRLAHPDPHVQVHAATLLDAC 467
V+RAT++ +W + +EICD AK+ ++++ +R+AH + VQ+ A TLL+
Sbjct: 6 VDRATNDMLIGPDWAMNLEICDTLNRDPGQAKDVVKSIKKRIAHRNAKVQLLALTLLETM 65
Query: 468 VANCGRFFHLEVASRDFETEFRRLLSR 548
+ NCG H++VA +D E +++ +
Sbjct: 66 IKNCGDIVHMQVAEKDILHEMVKIVKK 92
>05_03_0582 -
15738503-15739301,15739385-15739642,15740585-15740670,
15740879-15740960,15741044-15741213,15742081-15742194,
15742984-15743082,15743171-15743249,15744604-15744710
Length = 597
Score = 66.5 bits (155), Expect = 2e-11
Identities = 31/87 (35%), Positives = 49/87 (56%)
Frame = +3
Query: 288 VERATSENNTSEEWGLIMEICDRAGASSTSAKECLRAVMRRLAHPDPHVQVHAATLLDAC 467
V++ATSE +W L ++ICD + AKE ++A+ +RL H + VQ A TLL+
Sbjct: 8 VDKATSELLLGPDWTLNIDICDAVNSDHGQAKEVIKALKKRLQHKNSKVQFFALTLLETL 67
Query: 468 VANCGRFFHLEVASRDFETEFRRLLSR 548
+ NCG H +V RD E +++ +
Sbjct: 68 MKNCGDHVHSQVVERDILQEMIKIVKK 94
>02_05_0402 +
28687597-28687671,28688123-28688235,28688927-28689432,
28689544-28689717,28689953-28690082,28692241-28692772,
28693578-28693823,28694648-28695061
Length = 729
Score = 62.9 bits (146), Expect = 2e-10
Identities = 40/122 (32%), Positives = 56/122 (45%)
Frame = +3
Query: 255 IFGTSSPFDQDVERATSENNTSEEWGLIMEICDRAGASSTSAKECLRAVMRRLAHPDPHV 434
IF +P D+ VE ATSEN +W +EICD ++ E +R + +R+ D V
Sbjct: 378 IFQGQTPADKIVEEATSENLDGPDWSANLEICDLINTEKVNSVELIRGIKKRIMLKDARV 437
Query: 435 QVHAATLLDACVANCGRFFHLEVASRDFETEFRRLLSRAQPPVXXXXXXXXXKWAEGEFR 614
Q + LL+ V NC + F EVA+ E RL+ Q V A GE
Sbjct: 438 QYLSLVLLETIVKNCEKAFS-EVAAERVLDEMVRLIDDPQTVVNNRNKALMLIEAWGESG 496
Query: 615 DD 620
D+
Sbjct: 497 DE 498
>06_02_0206 +
13005863-13005966,13006918-13007080,13008534-13008632,
13008704-13008817,13009094-13009254,13009746-13009827,
13009972-13010057,13011563-13011742,13011913-13012424,
13012844-13013478
Length = 711
Score = 50.4 bits (115), Expect(2) = 1e-09
Identities = 20/61 (32%), Positives = 37/61 (60%)
Frame = +3
Query: 366 SSTSAKECLRAVMRRLAHPDPHVQVHAATLLDACVANCGRFFHLEVASRDFETEFRRLLS 545
S + AK+ ++++ +R+ H + +Q+ A TLL+ + NCG F H+ VA RD E ++
Sbjct: 61 SRSQAKDVVKSIKKRIGHKNSKIQLLALTLLETLIKNCGDFVHMHVAERDILHEMVKIAK 120
Query: 546 R 548
+
Sbjct: 121 K 121
Score = 30.3 bits (65), Expect(2) = 1e-09
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +3
Query: 288 VERATSENNTSEEWGLIMEICD 353
V+RATSE+ +W L +EICD
Sbjct: 7 VDRATSESLIGPDWSLNLEICD 28
>10_08_1044 + 22532596-22533114,22533425-22533688,22533926-22534306
Length = 387
Score = 57.2 bits (132), Expect = 1e-08
Identities = 35/114 (30%), Positives = 54/114 (47%)
Frame = +3
Query: 279 DQDVERATSENNTSEEWGLIMEICDRAGASSTSAKECLRAVMRRLAHPDPHVQVHAATLL 458
D+ V+ AT E + +W +EICD + ++ E +RA+ RR+ +P VQ A LL
Sbjct: 49 DKIVDEATLETMDAPDWATNLEICDMVNTGNVNSIELIRAIKRRIMLKNPRVQYLALVLL 108
Query: 459 DACVANCGRFFHLEVASRDFETEFRRLLSRAQPPVXXXXXXXXXKWAEGEFRDD 620
+ V NC + F E+A+ E +L+ Q V A GE D+
Sbjct: 109 ETVVKNCEKAFS-EIAAERVLDEMVKLIDDPQTVVNNRNKALMLIEAWGESGDE 161
>08_01_0063 +
439640-439740,440067-440145,440586-440684,440767-440880,
441218-441381,442237-442312,442502-442587,442706-442861,
442934-443264
Length = 401
Score = 45.2 bits (102), Expect = 5e-05
Identities = 21/72 (29%), Positives = 36/72 (50%)
Frame = +3
Query: 288 VERATSENNTSEEWGLIMEICDRAGASSTSAKECLRAVMRRLAHPDPHVQVHAATLLDAC 467
V+ ATSE +W +EIC+ AK+ ++ + + L + Q++A LL+
Sbjct: 6 VKAATSEKLKEMDWAKNIEICELVAQDPGKAKDVIKPIKKYLGSRSKNTQLYAVMLLEML 65
Query: 468 VANCGRFFHLEV 503
+ NCG H +V
Sbjct: 66 MNNCGEPIHKQV 77
>11_01_0620 -
4964263-4965052,4965578-4965663,4966332-4966413,
4967052-4967156,4967600-4967772,4967988-4968101,
4973939-4974037,4974320-4974398,4975424-4975492,
4975955-4976061
Length = 567
Score = 33.5 bits (73), Expect = 0.17
Identities = 14/57 (24%), Positives = 31/57 (54%)
Frame = +3
Query: 378 AKECLRAVMRRLAHPDPHVQVHAATLLDACVANCGRFFHLEVASRDFETEFRRLLSR 548
AK+ L+ + +RL + + VQ+ +L+ NCG + ++ RD +E +++ +
Sbjct: 61 AKDTLKLLKKRLGNKNSKVQILTLYVLETLSKNCGDVVYQQIIERDILSEMVKIVKK 117
>12_02_0912 -
24238659-24238897,24239353-24239462,24239548-24239741,
24239839-24239907,24240096-24240282,24240683-24240969,
24241593-24241880
Length = 457
Score = 31.1 bits (67), Expect = 0.91
Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Frame = +1
Query: 337 SWRY--VIAPVHLLPVRRSVSVPSC-GAWRIPTHTYRFTPPHCSTPALQIVVVSSTWKSP 507
SW Y V + HL+ V S + WRIP T R PP C T ALQ++ + + P
Sbjct: 207 SWLYGLVGSCAHLVMVNSSWTRSHIENIWRIPERTRRVYPP-CDTSALQMLPLERSTTPP 265
>01_07_0178 + 41810795-41811409
Length = 204
Score = 28.7 bits (61), Expect = 4.8
Identities = 18/62 (29%), Positives = 30/62 (48%)
Frame = +3
Query: 297 ATSENNTSEEWGLIMEICDRAGASSTSAKECLRAVMRRLAHPDPHVQVHAATLLDACVAN 476
A+SE+ +S + L+ R+ + ++ L AV+RRL H +P + A A A
Sbjct: 56 ASSESESSSDDALMARSTPRSVLPAEISRRELEAVLRRLGHGEPDDEELDAVAAIAAEAE 115
Query: 477 CG 482
G
Sbjct: 116 AG 117
>12_02_0735 - 22636835-22639502,22639755-22640734
Length = 1215
Score = 27.9 bits (59), Expect = 8.5
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +1
Query: 247 KWGYLALPRLLIKMLNAQRVKITPARS 327
+W YL +P + I M+NA + + AR+
Sbjct: 1110 RWSYLMVPPVTIMMVNAVAIAVAAART 1136
>08_02_0311 - 15635165-15635590,15635777-15638698
Length = 1115
Score = 27.9 bits (59), Expect = 8.5
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -2
Query: 91 TKVISYTKVFIIYRIFTVRISILWRI 14
T VIS ++FI+ R+F + + WRI
Sbjct: 290 TSVISPYRIFIVIRMFVLLFYLTWRI 315
>06_01_1013 - 7931756-7935109
Length = 1117
Score = 27.9 bits (59), Expect = 8.5
Identities = 17/50 (34%), Positives = 19/50 (38%), Gaps = 1/50 (2%)
Frame = +1
Query: 319 ARSGD*SWRYV-IAPVHLLPVRRSVSVPSCGAWRIPTHTYRFTPPHCSTP 465
A D SWR VH +P R CG R P + TP C P
Sbjct: 197 ASDPDSSWRCPGCQSVHAVPARELAYTCFCGRRREPPNDLFLTPHSCGEP 246
>01_07_0306 + 42638683-42638990,42639074-42639314,42639935-42640236,
42640431-42640607,42640853-42641617,42641697-42641791,
42641889-42641951,42642047-42642135,42642229-42642324,
42642457-42643104,42643596-42643628,42643838-42643912,
42644442-42644603,42644604-42644674,42644758-42644815,
42645196-42645394,42645487-42645552,42645699-42646183
Length = 1310
Score = 27.9 bits (59), Expect = 8.5
Identities = 18/66 (27%), Positives = 33/66 (50%)
Frame = +1
Query: 115 LFLKFFIKQEIFV*SILFHSDFSIKNYLIFLSITYNQVDVFLLTKWGYLALPRLLIKMLN 294
LF + I +I + + FH D S +L+ L + ++DV L YL L L + +N
Sbjct: 961 LFEQASISHKICMRTPTFHCDVSWTVFLLLLPDVFWEIDVLFLRVNTYLTLVLLDLFQVN 1020
Query: 295 AQRVKI 312
++ ++
Sbjct: 1021 QKKCQL 1026
>01_05_0351 + 21269339-21269527,21269758-21269961
Length = 130
Score = 27.9 bits (59), Expect = 8.5
Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +2
Query: 368 FYQCEGVSPCRHAALGASRP-TRTGSRRHTARRLRCKLWSFLPPGSRLARL 517
FY C SPC AA S P +R G + R C+ LP + LARL
Sbjct: 18 FYSCGEASPCSLAASAPSCPASRLGLSKKLEARELCRAELKLP--TSLARL 66
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,093,711
Number of Sequences: 37544
Number of extensions: 338051
Number of successful extensions: 1181
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1180
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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