Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0518
(713 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_53310| Best HMM Match : VHS (HMM E-Value=0) 124 5e-29
SB_6150| Best HMM Match : GAT (HMM E-Value=2.3e-34) 67 1e-11
SB_1457| Best HMM Match : VHS (HMM E-Value=2e-31) 64 1e-10
SB_2438| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.93
SB_16714| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_15787| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_58220| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_56594| Best HMM Match : DUF11 (HMM E-Value=1.2) 28 6.5
SB_23022| Best HMM Match : CUB (HMM E-Value=0) 28 6.5
>SB_53310| Best HMM Match : VHS (HMM E-Value=0)
Length = 253
Score = 124 bits (300), Expect = 5e-29
Identities = 61/138 (44%), Positives = 84/138 (60%), Gaps = 1/138 (0%)
Frame = +3
Query: 255 IFGTSSPFDQDVERATSENNTSEEWGLIMEICDRAGASSTSAKECLRAVMRRLAHPDPHV 434
+ G S E+ATSE NT+E+W +IMEICD+ S K+ LR++M+R+ H +PH+
Sbjct: 33 VVGRSKTKQTGSEKATSELNTTEDWQIIMEICDKIPRSPNGPKDALRSIMKRVIHRNPHI 92
Query: 435 QVHAATLLDACVANCGRFFHLEVASRDFETEFRR-LLSRAQPPVXXXXXXXXXKWAEGEF 611
+ A TLL ACV NCG+ FHLE+ SRDF +E + LLSR P V +W F
Sbjct: 93 AMQALTLLSACVNNCGKVFHLEICSRDFVSEAKSILLSRTHPKVMDKFKELIKEWV-NMF 151
Query: 612 RDDPQLDLIPALHARLPT 665
++DPQL LI + +L T
Sbjct: 152 KEDPQLSLISVMCEQLKT 169
>SB_6150| Best HMM Match : GAT (HMM E-Value=2.3e-34)
Length = 674
Score = 67.3 bits (157), Expect = 1e-11
Identities = 34/91 (37%), Positives = 50/91 (54%), Gaps = 1/91 (1%)
Frame = +3
Query: 294 RATSENNTSEEWGLIMEICDRAGASSTSAKECLRAVMRRLAHPDPHVQVHAA-TLLDACV 470
RAT SE+W L +EICD + K+ +A+ +RL + V T+L++C+
Sbjct: 2 RATDGGLASEDWSLNLEICDIINETDEGPKDAAKAIRKRLTNNKNFKSVLLTLTVLESCI 61
Query: 471 ANCGRFFHLEVASRDFETEFRRLLSRAQPPV 563
NCG FH+ VA ++F E +LLS Q PV
Sbjct: 62 KNCGHRFHVLVAKKEFLDEMTKLLSPKQSPV 92
>SB_1457| Best HMM Match : VHS (HMM E-Value=2e-31)
Length = 892
Score = 63.7 bits (148), Expect = 1e-10
Identities = 28/92 (30%), Positives = 49/92 (53%)
Frame = +3
Query: 363 ASSTSAKECLRAVMRRLAHPDPHVQVHAATLLDACVANCGRFFHLEVASRDFETEFRRLL 542
A+ K + A+ +++ +PHV +A T+L+AC+ NCG H E+A++DF E R L+
Sbjct: 105 AAPAQPKFAVSAIKKKMFDRNPHVAKYALTVLEACMKNCGSIIHDEIATKDFMDEMRNLI 164
Query: 543 SRAQPPVXXXXXXXXXKWAEGEFRDDPQLDLI 638
PV W+ FR++P+ ++
Sbjct: 165 KNGADPVKDKALGLIQTWSHA-FRNEPKYKIV 195
>SB_2438| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1086
Score = 31.1 bits (67), Expect = 0.93
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = +1
Query: 436 RFTPPHCSTPALQIVVVSSTWKSPRETSRPSSGACCLARSLLSP 567
RF P C + + V + TW +TS P+ LA S L P
Sbjct: 904 RFGIPECLFSSAEFAVFAKTWAFEHKTSSPTYAQSYLAGSFLQP 947
>SB_16714| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 961
Score = 29.1 bits (62), Expect = 3.7
Identities = 19/60 (31%), Positives = 29/60 (48%)
Frame = -1
Query: 485 TTTICNAGVEQCGGVNLYVWVGMRQAPHDGTETLLRTGRRCTGAITYLHDQSPLLAGVIF 306
TT ++G+E GG+N +W G A + G + TG I Y+ PL+ +IF
Sbjct: 260 TTLGISSGIEDGGGMNWKLW-GCLVATWILVWLCMCKGIKVTGKIVYITATLPLILLIIF 318
>SB_15787| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 618
Score = 29.1 bits (62), Expect = 3.7
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = -1
Query: 374 GRRCTGAITYLHDQSPLLAGVIFTRCAFNIL 282
G RCT I Y HD P+ +G ++ + + N +
Sbjct: 156 GSRCTSCIFYRHDAYPISSGRLYEQTSNNAI 186
>SB_58220| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 207
Score = 28.3 bits (60), Expect = 6.5
Identities = 13/43 (30%), Positives = 21/43 (48%)
Frame = +3
Query: 261 GTSSPFDQDVERATSENNTSEEWGLIMEICDRAGASSTSAKEC 389
GT FDQ SEN + + L+ +CD + S + + +C
Sbjct: 135 GTDRDFDQQFGSEDSENESDSDEDLV--LCDSSSDSDSDSSDC 175
>SB_56594| Best HMM Match : DUF11 (HMM E-Value=1.2)
Length = 375
Score = 28.3 bits (60), Expect = 6.5
Identities = 17/47 (36%), Positives = 21/47 (44%)
Frame = +2
Query: 353 SRRCIFYQCEGVSPCRHAALGASRPTRTGSRRHTARRLRCKLWSFLP 493
S RCI G S CR L P+R+ + R R R + W LP
Sbjct: 85 SSRCIPCGERGFSACRSGGLRC--PSRSHAMRSMRTRRRARYWDRLP 129
>SB_23022| Best HMM Match : CUB (HMM E-Value=0)
Length = 1307
Score = 28.3 bits (60), Expect = 6.5
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +1
Query: 337 SWRYVIAPVHLLPVRRSVSV-PSCGAWRIPTHTYRFTPPHCSTPALQI 477
S R V+ P ++ S S+ PS +WRIPT + TP TP +
Sbjct: 975 STRNVLEPSSIMT---STSILPSTSSWRIPTSSSVTTPTSAPTPTTPV 1019
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,381,691
Number of Sequences: 59808
Number of extensions: 369228
Number of successful extensions: 1024
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1019
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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