Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0518
(713 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U97407-8|AAN84851.1| 397|Caenorhabditis elegans Prion-like-(q/n... 75 4e-14
U97407-7|AAB52480.2| 457|Caenorhabditis elegans Prion-like-(q/n... 75 4e-14
U58751-7|AAB00658.2| 729|Caenorhabditis elegans Hepatocyte grow... 71 6e-13
U41542-4|AAK39154.1| 437|Caenorhabditis elegans Hypothetical pr... 61 9e-10
U41542-3|AAK39156.1| 403|Caenorhabditis elegans Hypothetical pr... 61 9e-10
AF003385-3|AAB54248.2| 228|Caenorhabditis elegans Hypothetical ... 31 0.62
Z81453-6|CAH04639.1| 283|Caenorhabditis elegans Hypothetical pr... 28 5.8
>U97407-8|AAN84851.1| 397|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 19,
isoform b protein.
Length = 397
Score = 75.4 bits (177), Expect = 4e-14
Identities = 40/130 (30%), Positives = 64/130 (49%)
Frame = +3
Query: 270 SPFDQDVERATSENNTSEEWGLIMEICDRAGASSTSAKECLRAVMRRLAHPDPHVQVHAA 449
S ++ + + T+ T E W I+ CD +K ++++ +RL + DPHV + A
Sbjct: 2 SAYEDLLGKITAPTITVENWEGILAFCDMINNDFEGSKTGIKSLRKRLNNRDPHVVLLAI 61
Query: 450 TLLDACVANCGRFFHLEVASRDFETEFRRLLSRAQPPVXXXXXXXXXKWAEGEFRDDPQL 629
++LD+C ANC F EV+S F E + L + +Q V KW + E + + L
Sbjct: 62 SVLDSCWANCEERFRKEVSSAQFINELKALCTSSQRQVAEKMRLTVQKWVDTECKTEQSL 121
Query: 630 DLIPALHARL 659
LI LH L
Sbjct: 122 SLIVTLHKNL 131
>U97407-7|AAB52480.2| 457|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 19,
isoform a protein.
Length = 457
Score = 75.4 bits (177), Expect = 4e-14
Identities = 40/130 (30%), Positives = 64/130 (49%)
Frame = +3
Query: 270 SPFDQDVERATSENNTSEEWGLIMEICDRAGASSTSAKECLRAVMRRLAHPDPHVQVHAA 449
S ++ + + T+ T E W I+ CD +K ++++ +RL + DPHV + A
Sbjct: 10 SAYEDLLGKITAPTITVENWEGILAFCDMINNDFEGSKTGIKSLRKRLNNRDPHVVLLAI 69
Query: 450 TLLDACVANCGRFFHLEVASRDFETEFRRLLSRAQPPVXXXXXXXXXKWAEGEFRDDPQL 629
++LD+C ANC F EV+S F E + L + +Q V KW + E + + L
Sbjct: 70 SVLDSCWANCEERFRKEVSSAQFINELKALCTSSQRQVAEKMRLTVQKWVDTECKTEQSL 129
Query: 630 DLIPALHARL 659
LI LH L
Sbjct: 130 SLIVTLHKNL 139
>U58751-7|AAB00658.2| 729|Caenorhabditis elegans Hepatocyte growth
factor-regulatedtk substrate (hrs) family protein 1
protein.
Length = 729
Score = 71.3 bits (167), Expect = 6e-13
Identities = 38/129 (29%), Positives = 63/129 (48%), Gaps = 1/129 (0%)
Frame = +3
Query: 267 SSPFDQDVERATSENNTSEEWGLIMEICDRAGASSTSAKECLRAVMRRLAHPDPHVQVHA 446
++ F + +++AT W I+ D + AK L+A+ +R+ H +PHV H
Sbjct: 2 ATKFQRVLDQATDSTLVEPNWEGIILCTDMIRSGEVPAKPSLQAIRKRMQHENPHVVNHT 61
Query: 447 ATLLDACVANCGRFFHLEVASRDFETEFRRLLSRAQ-PPVXXXXXXXXXKWAEGEFRDDP 623
+LDACV NCG H EVA+R+F +F+ L++ + V WA F + P
Sbjct: 62 LLVLDACVKNCGHKVHAEVATREFMEDFKNLVTENKYDEVKNKSLEMLQCWATA-FANKP 120
Query: 624 QLDLIPALH 650
+ ++ H
Sbjct: 121 EYKMVVDTH 129
>U41542-4|AAK39154.1| 437|Caenorhabditis elegans Hypothetical
protein C07A12.7a protein.
Length = 437
Score = 60.9 bits (141), Expect = 9e-10
Identities = 38/128 (29%), Positives = 63/128 (49%), Gaps = 7/128 (5%)
Frame = +3
Query: 267 SSPFDQDVERATSENN-TSEEWGLIMEICDRAGASSTSAKECLRAVMRRLAH---PDPHV 434
++P + +E AT N +E WGL MEICD + ++ +RA+ +RL + + V
Sbjct: 36 ATPVGRKIELATDANLLATENWGLNMEICDFINGTEDGPRDAVRALKKRLHNAMSKNNAV 95
Query: 435 QVHAATLLDACVANCGRFFHLEVASRDFETEFRRLLS---RAQPPVXXXXXXXXXKWAEG 605
++ T+L+ V NC FH+ V ++DF + +L+ A + WA+
Sbjct: 96 VMYTLTVLETAVKNCNHHFHVLVCNKDFVQDLIKLIGPKFDAPQIIQERVLSLIQAWADA 155
Query: 606 EFRDDPQL 629
FR DP L
Sbjct: 156 -FRGDPTL 162
>U41542-3|AAK39156.1| 403|Caenorhabditis elegans Hypothetical
protein C07A12.7b protein.
Length = 403
Score = 60.9 bits (141), Expect = 9e-10
Identities = 38/128 (29%), Positives = 63/128 (49%), Gaps = 7/128 (5%)
Frame = +3
Query: 267 SSPFDQDVERATSENN-TSEEWGLIMEICDRAGASSTSAKECLRAVMRRLAH---PDPHV 434
++P + +E AT N +E WGL MEICD + ++ +RA+ +RL + + V
Sbjct: 36 ATPVGRKIELATDANLLATENWGLNMEICDFINGTEDGPRDAVRALKKRLHNAMSKNNAV 95
Query: 435 QVHAATLLDACVANCGRFFHLEVASRDFETEFRRLLS---RAQPPVXXXXXXXXXKWAEG 605
++ T+L+ V NC FH+ V ++DF + +L+ A + WA+
Sbjct: 96 VMYTLTVLETAVKNCNHHFHVLVCNKDFVQDLIKLIGPKFDAPQIIQERVLSLIQAWADA 155
Query: 606 EFRDDPQL 629
FR DP L
Sbjct: 156 -FRGDPTL 162
>AF003385-3|AAB54248.2| 228|Caenorhabditis elegans Hypothetical
protein R08F11.6 protein.
Length = 228
Score = 31.5 bits (68), Expect = 0.62
Identities = 21/52 (40%), Positives = 29/52 (55%)
Frame = +1
Query: 115 LFLKFFIKQEIFV*SILFHSDFSIKNYLIFLSITYNQVDVFLLTKWGYLALP 270
L KF + Q + V I +S S+ + LIFLS+TYNQ + GY +LP
Sbjct: 90 LLTKFGMHQTLIVFGI--YSMLSLFSKLIFLSLTYNQNVSLQNRQEGYCSLP 139
>Z81453-6|CAH04639.1| 283|Caenorhabditis elegans Hypothetical
protein B0250.10 protein.
Length = 283
Score = 28.3 bits (60), Expect = 5.8
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -2
Query: 106 ITLFLTKVISYTKVFIIYRIFTVRISILWR 17
I +F T ++ VFI Y F + ISI WR
Sbjct: 4 IAVFTTLILILFSVFICYLNFLLLISIFWR 33
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,609,318
Number of Sequences: 27780
Number of extensions: 278716
Number of successful extensions: 775
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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