Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0517
         (684 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces ...   121   8e-29
SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces ...    30   0.27 
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su...    29   0.63 
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac...    25   7.7  
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    25   7.7  
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos...    25   7.7  
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    25   7.7  

>SPBC1734.13 |atp3||F1-ATPase gamma subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 301

 Score =  121 bits (292), Expect = 8e-29
 Identities = 68/179 (37%), Positives = 105/179 (58%), Gaps = 1/179 (0%)
 Frame = +2

Query: 149 ATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQFYERAEVTPP 328
           ATLK I  RLKS+KNI+KIT+++K V+  K TRA+R ++A+  Y   + + ++ A    P
Sbjct: 32  ATLKEIEQRLKSIKNIEKITKTIKTVAQTKLTRAQRAMEASNKYYRVSDEVFKEAGTKAP 91

Query: 329 EDDPKQLFVAMTSDRGLCGAVHTGVSKVIRNRLGEPGA-ENIKVICVGDKSRGILQRLYG 505
           E+  K L VA +SD+GLCG +H+ +S++IR  L +P   EN  +  +G+K R  L R   
Sbjct: 92  EEG-KTLMVACSSDKGLCGGIHSSISRLIRRELHDPKTFENTSLCILGEKVRTQLLRFCP 150

Query: 506 KHIISVANEIGRLPPTFLDASQLATAILTSRYEFGSGKIIYNKFKSVVSYAQSDLPLYT 682
           +        IG   P+F +A Q+++ IL    ++    ++YNKF S VS+      LYT
Sbjct: 151 ESFYLTFAHIGGASPSFEEALQISSNILEHAKDYDRIVLVYNKFASAVSFETVMKNLYT 209


>SPAC1039.09 |isp5||amino acid permease Isp5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 580

 Score = 30.3 bits (65), Expect = 0.27
 Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
 Frame = +2

Query: 323 PPEDD-PKQLFVAMTSDR----GLCGAVHTGVSKVIRNRLGEPGAENIKVICVGDKSRGI 487
           PPED  P++L   +T+      G+ GA+ TGV    +N L E GA ++ +IC       +
Sbjct: 70  PPEDGKPQKLKRTLTARHIQMIGIGGAIGTGVWVGSKNTLREGGAASV-LICYSLVGSMV 128

Query: 488 LQRLYGKHIISVA 526
           L  +Y    ++VA
Sbjct: 129 LMTVYSLGELAVA 141


>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 29.1 bits (62), Expect = 0.63
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -2

Query: 674 GASRTGRKRPQT*TCCK*FFRNQTRILR*EWQW 576
           GAS+T   RP + +C    F N+   L+ EW W
Sbjct: 45  GASKTKHGRPWSISCLVYGFPNKVSALKFEWNW 77


>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
            Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1373

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +2

Query: 137  TGNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDL 262
            T N    KAI I  K VKNI   T ++++       RA + L
Sbjct: 1070 TKNKQPRKAILIEFKGVKNINAETVTLRVKDLTHLHRAYKGL 1111


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 15/58 (25%), Positives = 28/58 (48%)
 Frame = -3

Query: 574 QLTCVQESRWETSDLISNTNDVLSVQSLQDTARFISHTDHLDVLSTRFAETVADHFGY 401
           +L  + ES+++T+    +T     +  + D  R+I   D  D +    +ET+A  F Y
Sbjct: 425 KLWYLNESKFDTNPPPRSTMSCRKLSGIDDPFRYIVFNDIQDFIVCFESETIAFAFKY 482


>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
           Rad50|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1290

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 14/47 (29%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
 Frame = -3

Query: 661 LGVR--DHRLELVVNDFSGTKLVS*GENGSGQLTCVQESRWETSDLI 527
           +G+R  D+R    +  FS   L+  G+NGSG+ T ++  ++ T+ ++
Sbjct: 10  MGIRSFDNRSRESIQFFSPLTLIV-GQNGSGKTTIIECLKYATTGIL 55


>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting protein
            3 homolog Bud6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1385

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +2

Query: 179  KSVKNIQKITQSMKMVSAAKYTRAERDLK 265
            + VKN+Q    S+K +SAA +TR    +K
Sbjct: 958  QQVKNMQLELASLKQISAAFFTRIPLKIK 986


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,064,208
Number of Sequences: 5004
Number of extensions: 65530
Number of successful extensions: 188
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)