Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0517
         (684 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_05_0025 + 8215685-8215716,8215859-8215937,8216340-8216412,821...    64   1e-10
07_03_0571 - 19602755-19603831                                         61   7e-10
08_01_0543 - 4721424-4721477,4721728-4721769,4722014-4722071,472...    29   4.5  
11_02_0119 - 8502455-8503015,8503311-8504009,8504512-8504571,850...    28   6.0  
01_06_0030 + 25756294-25756575,25756977-25757101,25757276-257573...    28   6.0  

>10_05_0025 +
           8215685-8215716,8215859-8215937,8216340-8216412,
           8216712-8216864,8217456-8217569,8217649-8217776,
           8219004-8219099,8219479-8219601,8219694-8219810,
           8219983-8220104,8220439-8220508
          Length = 368

 Score = 64.1 bits (149), Expect = 1e-10
 Identities = 44/133 (33%), Positives = 72/133 (54%), Gaps = 3/133 (2%)
 Frame = +2

Query: 158 KAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQFYERAEVTPPEDD 337
           +A+  R+KSV+NIQKIT++MKMV+A+K    +   + +R   +    F       P  D 
Sbjct: 60  RALRTRMKSVRNIQKITKAMKMVAASKLRAVQIRTENSRGLWQ---PFTALLGDVPSVDV 116

Query: 338 PKQLFVAMTSDRGLCGAVHT---GVSKVIRNRLGEPGAENIKVICVGDKSRGILQRLYGK 508
            K + VA+TSD+GLCG +++    VSK +      P  E+ K + +G+K +  L R    
Sbjct: 117 KKNVIVAITSDKGLCGGINSTSVKVSKALHKLTSGPEKES-KYVILGEKGKVQLIRDSKD 175

Query: 509 HIISVANEIGRLP 547
           +I    +E+ + P
Sbjct: 176 NIEMTVSELQKNP 188


>07_03_0571 - 19602755-19603831
          Length = 358

 Score = 61.3 bits (142), Expect = 7e-10
 Identities = 52/183 (28%), Positives = 87/183 (47%), Gaps = 17/183 (9%)
 Frame = +2

Query: 152 TLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQ-FYERAEVTPP 328
           +L+ +  R+ SV+N QKIT++MK+V+AAK  RA+  + ++RP+ E  V+  Y   +    
Sbjct: 37  SLRELRSRIDSVRNTQKITEAMKLVAAAKVRRAQEAVVSSRPFSEALVEVLYNMNQEIQT 96

Query: 329 ED----------DPKQLFVAMTSDRGLCGAVHTGVSKVIRNRLGEPGAENIK--VICVGD 472
           ED            K   V +T +RGLCG+ +  V K    R+ E     ++  V+ VG 
Sbjct: 97  EDIDLPLTRIRPVKKVALVVLTGERGLCGSFNNNVLKKAETRIEELKQLGLEYTVVSVGK 156

Query: 473 KSRGILQRLYGKHIISVAN--EIGRLPPTFLDASQLATAILTSRYEFGSGKI--IYNKFK 640
           K      R   +  I      E+  + PT  D+  +   + +        K+  +Y+KF 
Sbjct: 157 KGNAYFIR---RPFIPTERTLEVNGI-PTVKDSQSICDLVYSLFVSEAVDKVELLYSKFV 212

Query: 641 SVV 649
           S+V
Sbjct: 213 SLV 215


>08_01_0543 -
           4721424-4721477,4721728-4721769,4722014-4722071,
           4722559-4722716
          Length = 103

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 7/67 (10%)
 Frame = +2

Query: 377 LCGAVHTGVSKVIRN-RLGEPGAENIKVICVGD------KSRGILQRLYGKHIISVANEI 535
           LC A H G++ +I   R G     N K+   G       + + + + LY +  + V  ++
Sbjct: 34  LCAAFHAGMALIINGVRRGRENENNCKICLSGKLNKYDMRGKDLHEVLYKEINVDVMEKV 93

Query: 536 GRLPPTF 556
           G L P F
Sbjct: 94  GSLDPKF 100


>11_02_0119 -
           8502455-8503015,8503311-8504009,8504512-8504571,
           8504744-8504800
          Length = 458

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 20/79 (25%), Positives = 34/79 (43%)
 Frame = -3

Query: 544 ETSDLISNTNDVLSVQSLQDTARFISHTDHLDVLSTRFAETVADHFGYTSVYSSAQTSVR 365
           E ++  SN ++ L   ++ D     S  + LDVL    +  VAD +    +  +A+ +  
Sbjct: 105 EVAECESNAHNDLEQITMDDIGELYSLCEELDVLDDDSSSWVADPWSSFQLVPTAEATDV 164

Query: 364 GHSNKQLLGVIFRRCNLSP 308
             +    LG I   C  SP
Sbjct: 165 DDAVVAALGAIDGSCRPSP 183


>01_06_0030 +
           25756294-25756575,25756977-25757101,25757276-25757313,
           25757501-25757611,25757703-25757782,25758264-25758318,
           25758465-25758851,25759080-25759223,25759630-25759671,
           25759755-25759837
          Length = 448

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -1

Query: 435 GSPRRLRITLDTPVCTAPHKPLSEVIATNNCLGSSSGG 322
           G PR  R  L  P+C    +PL  ++A+   +G   GG
Sbjct: 317 GEPRNHRWPLQPPLCLQFQQPLPVLLASAGRMGGDVGG 354


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,994,437
Number of Sequences: 37544
Number of extensions: 478477
Number of successful extensions: 1327
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1325
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)