Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0517
         (684 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10518| Best HMM Match : No HMM Matches (HMM E-Value=.)             178   3e-45
SB_45456| Best HMM Match : DUF963 (HMM E-Value=0.00083)                33   0.28 
SB_20003| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_23672| Best HMM Match : PHD (HMM E-Value=0.00049)                   28   6.1  
SB_4005| Best HMM Match : CAP_GLY (HMM E-Value=5.8e-17)                28   6.1  
SB_35341| Best HMM Match : Acyl-CoA_dh_M (HMM E-Value=2.9e-14)         28   8.1  
SB_7532| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.1  
SB_25452| Best HMM Match : CTF_NFI (HMM E-Value=1.2)                   28   8.1  
SB_5783| Best HMM Match : PIR (HMM E-Value=6.1)                        28   8.1  

>SB_10518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 328

 Score =  178 bits (434), Expect = 3e-45
 Identities = 81/190 (42%), Positives = 127/190 (66%)
 Frame = +2

Query: 113 WRWFTISQTGNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGA 292
           WR       G   +   +S+RL+SVKNIQKIT+SMKMVSAAK+ RAE++LK+AR YG+GA
Sbjct: 45  WRLPEHFSVGLFFSQNHVSLRLRSVKNIQKITKSMKMVSAAKFGRAEKELKSARAYGDGA 104

Query: 293 VQFYERAEVTPPEDDPKQLFVAMTSDRGLCGAVHTGVSKVIRNRLGEPGAENIKVICVGD 472
              Y++ E+    +DPK L V ++SDRGLCG +H+G++K ++  +    + N+ ++  GD
Sbjct: 105 TALYDKVEIKQESEDPKHLIVVLSSDRGLCGGIHSGLAKAVKASIAGNPSRNVGIVSFGD 164

Query: 473 KSRGILQRLYGKHIISVANEIGRLPPTFLDASQLATAILTSRYEFGSGKIIYNKFKSVVS 652
           K++ IL R  GK+++    ++G+ PP F +A+ LA  IL + ++F +G + YN F+SVVS
Sbjct: 165 KTKQILSRTLGKNMLMSFMDVGKKPPLFCEATFLAQEILDAGFDFNTGDMFYNVFRSVVS 224

Query: 653 YAQSDLPLYT 682
           +  S   +Y+
Sbjct: 225 FRASTKSIYS 234


>SB_45456| Best HMM Match : DUF963 (HMM E-Value=0.00083)
          Length = 337

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = -3

Query: 172 DGNGLQSSHIXCLADGKPPPRLGCR-HPVRSVPTFCKF 62
           + +G+ SS + C +DG P P + C+   + S P  CKF
Sbjct: 108 ESDGIPSSLVACESDGIPSPLVACKFDDIPSPPVACKF 145


>SB_20003| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 394

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 18/67 (26%), Positives = 30/67 (44%)
 Frame = +2

Query: 89  DRVSAPKSWRWFTISQTGNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKA 268
           D   APK    FT +   +    + +S+     KN  K  +   + +  + T+ +R  K+
Sbjct: 127 DMTDAPKKSYTFTSTNVHSTILNRRLSMAENVKKNYGKYIRDQDLENNQE-TKEDRTAKS 185

Query: 269 ARPYGEG 289
            RP GEG
Sbjct: 186 GRPRGEG 192


>SB_23672| Best HMM Match : PHD (HMM E-Value=0.00049)
          Length = 370

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 19/62 (30%), Positives = 29/62 (46%)
 Frame = -3

Query: 532 LISNTNDVLSVQSLQDTARFISHTDHLDVLSTRFAETVADHFGYTSVYSSAQTSVRGHSN 353
           LI N  DV      +D+   + HTD+  V  +R  E V DH   T+   + + S +  S+
Sbjct: 62  LIRNNADVDEGME-EDSQMPLDHTDNTPVTHSREFEAVDDHTPPTTPTETTRKSAKRQSD 120

Query: 352 KQ 347
            Q
Sbjct: 121 SQ 122


>SB_4005| Best HMM Match : CAP_GLY (HMM E-Value=5.8e-17)
          Length = 560

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = -3

Query: 181 FKTDGNGLQSSHIXCLADGKPPPRLGCRHPVRSVPTFCKFYGCLSV 44
           F  + NG+ ++ I   +  KP  + G R  VR      KF GC S+
Sbjct: 61  FNKNDNGVDANPIDTASPAKPEVKPGDRVHVRGYVGTVKFVGCTSL 106


>SB_35341| Best HMM Match : Acyl-CoA_dh_M (HMM E-Value=2.9e-14)
          Length = 490

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +1

Query: 388 CTHWCIQSDPQPSR 429
           C+ WCIQ  PQP R
Sbjct: 324 CSKWCIQGIPQPER 337


>SB_7532| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 416

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +2

Query: 308 RAEVTPPEDDPKQLFVAMTSDRGLCG 385
           RA  TPPE   K   + + S  GLCG
Sbjct: 263 RARATPPEVTDKMAILRLPSGLGLCG 288


>SB_25452| Best HMM Match : CTF_NFI (HMM E-Value=1.2)
          Length = 1056

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = +1

Query: 91  PGVGTQVVAVVYHQPNRXYGYFEGHFHPS 177
           PG   QV+    H  +  +GY   HFHPS
Sbjct: 645 PGRVPQVMEAFEHATHDPWGYLYFHFHPS 673


>SB_5783| Best HMM Match : PIR (HMM E-Value=6.1)
          Length = 215

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +3

Query: 72  NVGTLRTGCRHPSRGGGLP 128
           N+ TL TG R P  GGG+P
Sbjct: 26  NLNTLPTGARQPVPGGGVP 44


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,667,763
Number of Sequences: 59808
Number of extensions: 538359
Number of successful extensions: 1399
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1269
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1399
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)