Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0517
(684 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC084158-4|AAK68562.1| 299|Caenorhabditis elegans Hypothetical ... 196 9e-51
AC084158-3|AAL00872.1| 313|Caenorhabditis elegans Hypothetical ... 196 9e-51
AC084158-5|AAO21417.1| 200|Caenorhabditis elegans Hypothetical ... 167 8e-42
Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical pr... 31 1.0
U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related p... 31 1.0
AF043700-6|AAB97569.2| 443|Caenorhabditis elegans Hypothetical ... 30 1.3
Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical pr... 29 4.1
Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical pr... 29 4.1
AL021180-1|CAA15980.1| 383|Caenorhabditis elegans Hypothetical ... 29 4.1
AF303252-1|AAG50210.1| 383|Caenorhabditis elegans 3E324 protein. 29 4.1
Z81548-1|CAB04464.1| 1217|Caenorhabditis elegans Hypothetical pr... 28 5.4
Z75543-1|CAA99867.1| 314|Caenorhabditis elegans Hypothetical pr... 28 5.4
Z75533-1|CAA99815.1| 423|Caenorhabditis elegans Hypothetical pr... 28 5.4
U88184-3|AAK31519.1| 648|Caenorhabditis elegans Hypothetical pr... 28 7.1
U58745-2|AAU05593.1| 569|Caenorhabditis elegans Hypothetical pr... 27 9.4
U58745-1|AAB00620.2| 574|Caenorhabditis elegans Hypothetical pr... 27 9.4
AL033514-24|CAA22108.1| 2121|Caenorhabditis elegans Hypothetical... 27 9.4
>AC084158-4|AAK68562.1| 299|Caenorhabditis elegans Hypothetical
protein Y69A2AR.18a protein.
Length = 299
Score = 196 bits (479), Expect = 9e-51
Identities = 101/185 (54%), Positives = 127/185 (68%), Gaps = 4/185 (2%)
Frame = +2
Query: 134 QTGNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQFYER- 310
Q ATLK ISIRLKSVKNIQKIT+SMKMV+AAKY +AER+LK AR YG GA F++
Sbjct: 21 QARGFATLKDISIRLKSVKNIQKITKSMKMVAAAKYAKAERELKGARAYGVGAKTFFDNI 80
Query: 311 ---AEVTPPEDDPKQLFVAMTSDRGLCGAVHTGVSKVIRNRLGEPGAENIKVICVGDKSR 481
E ++ KQ+ V +TSDRGLCG VH+ + K +N L G + I+V+ +GDKSR
Sbjct: 81 DPVVEGVEKQESKKQVLVLITSDRGLCGGVHSSIVKEAKNILNNAGDKEIRVVAIGDKSR 140
Query: 482 GILQRLYGKHIISVANEIGRLPPTFLDASQLATAILTSRYEFGSGKIIYNKFKSVVSYAQ 661
LQRLY I+ NEIGR PP+F DAS A AIL S Y+F +G I++N+FK+VVSY
Sbjct: 141 AGLQRLYANSILLSGNEIGRAPPSFADASIAAKAILDSGYDFETGTILFNRFKTVVSYET 200
Query: 662 SDLPL 676
S L +
Sbjct: 201 SKLQI 205
>AC084158-3|AAL00872.1| 313|Caenorhabditis elegans Hypothetical
protein Y69A2AR.18b protein.
Length = 313
Score = 196 bits (479), Expect = 9e-51
Identities = 101/185 (54%), Positives = 127/185 (68%), Gaps = 4/185 (2%)
Frame = +2
Query: 134 QTGNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQFYER- 310
Q ATLK ISIRLKSVKNIQKIT+SMKMV+AAKY +AER+LK AR YG GA F++
Sbjct: 21 QARGFATLKDISIRLKSVKNIQKITKSMKMVAAAKYAKAERELKGARAYGVGAKTFFDNI 80
Query: 311 ---AEVTPPEDDPKQLFVAMTSDRGLCGAVHTGVSKVIRNRLGEPGAENIKVICVGDKSR 481
E ++ KQ+ V +TSDRGLCG VH+ + K +N L G + I+V+ +GDKSR
Sbjct: 81 DPVVEGVEKQESKKQVLVLITSDRGLCGGVHSSIVKEAKNILNNAGDKEIRVVAIGDKSR 140
Query: 482 GILQRLYGKHIISVANEIGRLPPTFLDASQLATAILTSRYEFGSGKIIYNKFKSVVSYAQ 661
LQRLY I+ NEIGR PP+F DAS A AIL S Y+F +G I++N+FK+VVSY
Sbjct: 141 AGLQRLYANSILLSGNEIGRAPPSFADASIAAKAILDSGYDFETGTILFNRFKTVVSYET 200
Query: 662 SDLPL 676
S L +
Sbjct: 201 SKLQI 205
>AC084158-5|AAO21417.1| 200|Caenorhabditis elegans Hypothetical
protein Y69A2AR.18c protein.
Length = 200
Score = 167 bits (405), Expect = 8e-42
Identities = 87/156 (55%), Positives = 106/156 (67%), Gaps = 4/156 (2%)
Frame = +2
Query: 134 QTGNMATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQFYER- 310
Q ATLK ISIRLKSVKNIQKIT+SMKMV+AAKY +AER+LK AR YG GA F++
Sbjct: 21 QARGFATLKDISIRLKSVKNIQKITKSMKMVAAAKYAKAERELKGARAYGVGAKTFFDNI 80
Query: 311 ---AEVTPPEDDPKQLFVAMTSDRGLCGAVHTGVSKVIRNRLGEPGAENIKVICVGDKSR 481
E ++ KQ+ V +TSDRGLCG VH+ + K +N L G + I+V+ +GDKSR
Sbjct: 81 DPVVEGVEKQESKKQVLVLITSDRGLCGGVHSSIVKEAKNILNNAGDKEIRVVAIGDKSR 140
Query: 482 GILQRLYGKHIISVANEIGRLPPTFLDASQLATAIL 589
LQRLY I+ NEIGR PP+F DAS A AIL
Sbjct: 141 AGLQRLYANSILLSGNEIGRAPPSFADASIAAKAIL 176
>Z46676-5|CAA86667.3| 418|Caenorhabditis elegans Hypothetical
protein C08B11.6 protein.
Length = 418
Score = 30.7 bits (66), Expect = 1.0
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Frame = -3
Query: 547 WETSDLI-SNTNDVLSVQSLQDTARFISHTDHLDVLSTRFAETVADHFGYTSVY-SSAQT 374
W+T I T + V++ + + L +E + D+FG+T V+ +SA T
Sbjct: 71 WDTQQQIWEKTFGSMDVEASTSRIALTDNNYLIPALPDVSSEILFDYFGFTEVHKTSAST 130
Query: 373 SVRGHSNK 350
V HSNK
Sbjct: 131 LVAKHSNK 138
>U24189-2|AAC47513.1| 418|Caenorhabditis elegans actin-related
protein-like protein.
Length = 418
Score = 30.7 bits (66), Expect = 1.0
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
Frame = -3
Query: 547 WETSDLI-SNTNDVLSVQSLQDTARFISHTDHLDVLSTRFAETVADHFGYTSVY-SSAQT 374
W+T I T + V++ + + L +E + D+FG+T V+ +SA T
Sbjct: 71 WDTQQQIWEKTFGSMDVEASTSRIALTDNNYLIPALPDVSSEILFDYFGFTEVHKTSAST 130
Query: 373 SVRGHSNK 350
V HSNK
Sbjct: 131 LVAKHSNK 138
>AF043700-6|AAB97569.2| 443|Caenorhabditis elegans Hypothetical
protein K09H9.2 protein.
Length = 443
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/53 (28%), Positives = 24/53 (45%)
Frame = +2
Query: 260 LKAARPYGEGAVQFYERAEVTPPEDDPKQLFVAMTSDRGLCGAVHTGVSKVIR 418
L RP+ + + + E +P DP F+ ++ D + GA G S IR
Sbjct: 63 LSKNRPFDQAMNKTMTKMEFSPDYSDPSSEFMLLSVDESVIGAFSEGQSLTIR 115
>Z74026-5|CAA98419.3| 3517|Caenorhabditis elegans Hypothetical protein
T04F3.1 protein.
Length = 3517
Score = 28.7 bits (61), Expect = 4.1
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = -3
Query: 562 VQESRWETSDLISNTNDVLSVQSLQDTARFISHTDHL-DVLSTRFAETVADHFGY 401
V +S DL +NT+ + S + T + T+ D S R T+ D FGY
Sbjct: 2425 VLKSSISLDDLFNNTSGIEKTTSEKTTTTTTTRTETTTDTYSKRSTSTLVDRFGY 2479
>Z72513-4|CAA96672.3| 3517|Caenorhabditis elegans Hypothetical protein
T04F3.1 protein.
Length = 3517
Score = 28.7 bits (61), Expect = 4.1
Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = -3
Query: 562 VQESRWETSDLISNTNDVLSVQSLQDTARFISHTDHL-DVLSTRFAETVADHFGY 401
V +S DL +NT+ + S + T + T+ D S R T+ D FGY
Sbjct: 2425 VLKSSISLDDLFNNTSGIEKTTSEKTTTTTTTRTETTTDTYSKRSTSTLVDRFGY 2479
>AL021180-1|CAA15980.1| 383|Caenorhabditis elegans Hypothetical
protein Y44F5A.1 protein.
Length = 383
Score = 28.7 bits (61), Expect = 4.1
Identities = 19/42 (45%), Positives = 21/42 (50%)
Frame = +2
Query: 458 ICVGDKSRGILQRLYGKHIISVANEIGRLPPTFLDASQLATA 583
+CV D G R K SV I LPPT L + QLATA
Sbjct: 75 LCVFDIDTGKRVRCILKCHRSVPTAICTLPPTALKSQQLATA 116
>AF303252-1|AAG50210.1| 383|Caenorhabditis elegans 3E324 protein.
Length = 383
Score = 28.7 bits (61), Expect = 4.1
Identities = 19/42 (45%), Positives = 21/42 (50%)
Frame = +2
Query: 458 ICVGDKSRGILQRLYGKHIISVANEIGRLPPTFLDASQLATA 583
+CV D G R K SV I LPPT L + QLATA
Sbjct: 75 LCVFDIDTGKRVRCILKCHRSVPTAICTLPPTALKSQQLATA 116
>Z81548-1|CAB04464.1| 1217|Caenorhabditis elegans Hypothetical
protein F54F12.1 protein.
Length = 1217
Score = 28.3 bits (60), Expect = 5.4
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Frame = -3
Query: 199 LDIFHRFKTDGNGLQSS--HIXCLAD---GKPPPRLGCRHPVRSVPTFCKFYGCLS 47
L+I FK D + LQS+ + LAD GK +G H + P F KFY CL+
Sbjct: 389 LEILVNFKKDLDALQSAVGEMPKLADEVNGKFK-NIGSYHNEVNAPHFLKFYDCLN 443
>Z75543-1|CAA99867.1| 314|Caenorhabditis elegans Hypothetical
protein K01D12.1 protein.
Length = 314
Score = 28.3 bits (60), Expect = 5.4
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -3
Query: 94 PVRSVPTFCKFYGCLSVKFTSRRKN 20
PV PTF FY C+ K S R N
Sbjct: 52 PVEGTPTFKAFYNCVYPKLASLRGN 76
>Z75533-1|CAA99815.1| 423|Caenorhabditis elegans Hypothetical
protein C54G4.2 protein.
Length = 423
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = -3
Query: 580 SGQLTCVQESRWETSDLISNTNDVLSVQSLQDTARFISH 464
S +T ES +TSDLIS+ D + +F+SH
Sbjct: 64 SASITPSTESTMKTSDLISSIGDHTEGEPSNGNTKFVSH 102
>U88184-3|AAK31519.1| 648|Caenorhabditis elegans Hypothetical
protein F36H5.8 protein.
Length = 648
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = -2
Query: 407 WIHQCVQLRTNLCQRS*QQTIAWGHLQEV*PQPFHRTVLHLHHRDEQLSG 258
WI C++L N R + + G QE+ F+R+++ LH + +L G
Sbjct: 425 WIDHCLELTNN--HRLNKLIVEAGDNQEIDMDGFYRSLIGLHIKTLELKG 472
>U58745-2|AAU05593.1| 569|Caenorhabditis elegans Hypothetical
protein C10G6.1b protein.
Length = 569
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +2
Query: 335 DPKQLFVAMTSDRGLCGAVHTGVSKVIRNRLGEPGAEN 448
+PK+L + +RGL VS +++NRL E G+EN
Sbjct: 230 NPKELLQFLKLNRGLFFIRSNKVS-LVKNRLNEDGSEN 266
>U58745-1|AAB00620.2| 574|Caenorhabditis elegans Hypothetical
protein C10G6.1a protein.
Length = 574
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +2
Query: 335 DPKQLFVAMTSDRGLCGAVHTGVSKVIRNRLGEPGAEN 448
+PK+L + +RGL VS +++NRL E G+EN
Sbjct: 230 NPKELLQFLKLNRGLFFIRSNKVS-LVKNRLNEDGSEN 266
>AL033514-24|CAA22108.1| 2121|Caenorhabditis elegans Hypothetical
protein Y75B8A.24 protein.
Length = 2121
Score = 27.5 bits (58), Expect = 9.4
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Frame = -3
Query: 487 DTARFISHTDHLDVLSTRFAETVADHFG----YTSVYSSAQTSVRGHSNKQLLGVIFR 326
D A + S + LDVL F++T++ H G + S S S+ G S K+ + + R
Sbjct: 1263 DVASYSSR-EQLDVLEMMFSQTLSAHIGTGHLHGSTACSNPASLAGPSRKETINQVTR 1319
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,227,952
Number of Sequences: 27780
Number of extensions: 384955
Number of successful extensions: 1027
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 978
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1024
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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