Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0517
(684 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g33040.1 68415.m04052 ATP synthase gamma chain, mitochondrial... 91 8e-19
At4g04640.1 68417.m00679 ATP synthase gamma chain 1, chloroplast... 65 4e-11
At1g15700.1 68414.m01884 ATP synthase gamma chain 2, chloroplast... 61 8e-10
At5g19130.2 68418.m02277 GPI transamidase component family prote... 29 2.9
At5g19130.1 68418.m02276 GPI transamidase component family prote... 29 2.9
At4g01380.1 68417.m00178 plastocyanin-like domain-containing pro... 29 2.9
At5g57890.1 68418.m07242 anthranilate synthase beta subunit, put... 28 5.0
At5g24550.1 68418.m02899 glycosyl hydrolase family 1 protein con... 28 5.0
At4g33430.1 68417.m04750 brassinosteroid insensitive 1-associate... 28 5.0
At1g25220.1 68414.m03130 anthranilate synthase beta subunit (ASB... 28 5.0
At1g25155.1 68414.m03123 anthranilate synthase beta subunit, put... 28 5.0
At1g25083.1 68414.m03118 anthranilate synthase beta subunit, put... 28 5.0
At1g24909.1 68414.m03112 anthranilate synthase beta subunit, put... 28 5.0
At1g24807.1 68414.m03108 anthranilate synthase beta subunit, put... 28 5.0
At4g02350.1 68417.m00319 exocyst complex subunit Sec15-like fami... 28 6.6
At3g60140.1 68416.m06715 glycosyl hydrolase family 1 protein con... 28 6.6
At2g13790.1 68415.m01522 leucine-rich repeat family protein / pr... 28 6.6
At5g09980.1 68418.m01153 expressed protein 27 8.8
At4g21050.1 68417.m03044 Dof-type zinc finger domain-containing ... 27 8.8
>At2g33040.1 68415.m04052 ATP synthase gamma chain, mitochondrial
(ATPC) identical to SP|Q96250 ATP synthase gamma chain,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; contains Pfam profile: PF00231 ATP synthase
Length = 325
Score = 90.6 bits (215), Expect = 8e-19
Identities = 57/163 (34%), Positives = 91/163 (55%), Gaps = 2/163 (1%)
Frame = +2
Query: 173 RLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQFYERAEVTPPEDDPKQLF 352
R+KSVKNIQKIT++MKMV+A+K + + +R + F P D K +
Sbjct: 51 RMKSVKNIQKITKAMKMVAASKLRAVQGRAENSRGLWQ---PFTALLGDNPSIDVKKSVV 107
Query: 353 VAMTSDRGLCGAVHTGVSKVIR--NRLGEPGAENIKVICVGDKSRGILQRLYGKHIISVA 526
V ++SD+GLCG +++ V KV R +L + ++ + VG+K++ I+ R I+
Sbjct: 108 VTLSSDKGLCGGINSTVVKVSRALYKLNAGPEKEVQFVIVGEKAKAIMFRDSKNDIVLSV 167
Query: 527 NEIGRLPPTFLDASQLATAILTSRYEFGSGKIIYNKFKSVVSY 655
E+ + P + S LA IL EF + +I+YNKF SVV++
Sbjct: 168 TELNKNPLNYAQVSVLADDIL-KNVEFDALRIVYNKFHSVVAF 209
>At4g04640.1 68417.m00679 ATP synthase gamma chain 1, chloroplast
(ATPC1) identical to SP|Q01908 ATP synthase gamma chain
1, chloroplast precursor (EC 3.6.3.14) {Arabidopsis
thaliana}
Length = 373
Score = 65.3 bits (152), Expect = 4e-11
Identities = 59/183 (32%), Positives = 86/183 (46%), Gaps = 16/183 (8%)
Frame = +2
Query: 149 ATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQFYERAEVTPP 328
A+L+ + R+ SVKN QKIT++MK+V+AAK RA+ + RP+ E V+
Sbjct: 51 ASLRELRDRIDSVKNTQKITEAMKLVAAAKVRRAQEAVVNGRPFSETLVEVLYNINEQLQ 110
Query: 329 EDD-----------PKQLFVAMTSDRGLCGAVHTGVSKVIRNRLGEPGAENIK--VICVG 469
DD K V +T DRGLCG + + K R+ E ++ VI VG
Sbjct: 111 TDDVDVPLTKVRPVKKVALVVVTGDRGLCGGFNNFIIKKAEARIKELKGLGLEYTVISVG 170
Query: 470 DKSRG-ILQRLYGKHIISVANEIGRLPPTFLDASQLATAI--LTSRYEFGSGKIIYNKFK 640
K L+R Y + E G L PT +A +A + L E +++Y KF
Sbjct: 171 KKGNSYFLRRPYIP--VDKYLEAGTL-PTAKEAQAVADDVFSLFISEEVDKVELLYTKFV 227
Query: 641 SVV 649
S+V
Sbjct: 228 SLV 230
>At1g15700.1 68414.m01884 ATP synthase gamma chain 2, chloroplast
(ATPC2) identical to SP|Q01909 ATP synthase gamma chain
2, chloroplast precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; contains Pfam profile: PF00231 ATP synthase;
similar to ATP synthase gamma-subunit GI:21241 from
[Spinacia oleracea]
Length = 386
Score = 60.9 bits (141), Expect = 8e-10
Identities = 55/182 (30%), Positives = 85/182 (46%), Gaps = 15/182 (8%)
Frame = +2
Query: 149 ATLKAISIRLKSVKNIQKITQSMKMVSAAKYTRAERDLKAARPYGEGAVQ-FYERAEVTP 325
A ++ + R+ SVKN QKIT++M++V+AA+ RA+ + RP+ E V+ Y +
Sbjct: 61 AGIRELRERIDSVKNTQKITEAMRLVAAARVRRAQDAVIKGRPFTETLVEILYSINQSAQ 120
Query: 326 PEDDPKQL----------FVAMTSDRGLCGAVHTGVSKVIRNRLGEPGAENIK--VICVG 469
ED L V +T D+GLCG + V+K R+ E I VI VG
Sbjct: 121 LEDIDFPLSIVRPVKRVALVVVTGDKGLCGGFNNAVTKKATLRVQELKQRGIDCVVISVG 180
Query: 470 DKSRGILQRLYGKHIISVANEIGRLPPTFLDASQLATAI--LTSRYEFGSGKIIYNKFKS 643
K R + + E G + PT +A +A + L E +++Y KF S
Sbjct: 181 KKGNAYFSR-RDEFDVDKCIEGGGVFPTTKEAQVIADDVFSLFVSEEVDKVELVYTKFVS 239
Query: 644 VV 649
+V
Sbjct: 240 LV 241
>At5g19130.2 68418.m02277 GPI transamidase component family protein
/ Gaa1-like family protein contains Pfam profile:
PF04114 Gaa1-like, GPI transamidase component
Length = 696
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = -1
Query: 528 LATLMMCFPYNLCRIPRDLSPTQITLMFSAPGSPRRLRITLDTPVCT 388
L ++ PY +C++P SPT ++M+ S L + P C+
Sbjct: 508 LGFIVTLLPYFICQVPGQHSPTNRSIMWGTTSSSLLLITFVTMPGCS 554
>At5g19130.1 68418.m02276 GPI transamidase component family protein
/ Gaa1-like family protein contains Pfam profile:
PF04114 Gaa1-like, GPI transamidase component
Length = 699
Score = 29.1 bits (62), Expect = 2.9
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = -1
Query: 528 LATLMMCFPYNLCRIPRDLSPTQITLMFSAPGSPRRLRITLDTPVCT 388
L ++ PY +C++P SPT ++M+ S L + P C+
Sbjct: 511 LGFIVTLLPYFICQVPGQHSPTNRSIMWGTTSSSLLLITFVTMPGCS 557
>At4g01380.1 68417.m00178 plastocyanin-like domain-containing
protein
Length = 210
Score = 29.1 bits (62), Expect = 2.9
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +1
Query: 550 YFLGRKSVGHCHSHLKIRV 606
YF+ K+ GHC++ LK+RV
Sbjct: 152 YFISSKTPGHCYAGLKLRV 170
>At5g57890.1 68418.m07242 anthranilate synthase beta subunit,
putative strong similarity to anthranilate synthase beta
chain GI:403434 [Arabidopsis thaliana]
Length = 273
Score = 28.3 bits (60), Expect = 5.0
Identities = 29/109 (26%), Positives = 45/109 (41%), Gaps = 19/109 (17%)
Frame = -1
Query: 591 VRMAVAN*LASKKVGGRRPISLATLMMCFPYNLCRIPRDLS-------PTQIT------- 454
+ MA +N ++S V PI + F YNLC+ +L ++T
Sbjct: 53 IEMAESNSISSVVVNSSGPIIVIDNYDSFTYNLCQYMGELGCHFEVYRNDELTVEELKRK 112
Query: 453 -----LMFSAPGSPRRLRITLDTPVCTAPHKPLSEVIATNNCLGSSSGG 322
L+ PG+P+ I+L T + P PL V C+G + GG
Sbjct: 113 KPRGLLISPGPGTPQDSGISLQTVLELGPLVPLFGVCMGLQCIGEAFGG 161
>At5g24550.1 68418.m02899 glycosyl hydrolase family 1 protein
contains Pfam PF00232 : Glycosyl hydrolase family 1
domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
similar to anther-specific protein ATA27 (GI:2746341)
[Arabidopsis thaliana]
Length = 534
Score = 28.3 bits (60), Expect = 5.0
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = -3
Query: 544 ETSDLISNTNDVLSVQSLQDTARFISHTDHLDVLSTRFAETVADHFGY 401
E S ++ N+ D + + TARF++H H+D+ RF T H Y
Sbjct: 327 EQSMMLQNSFDFIGINYY--TARFVAHDLHVDLSRPRF--TTDQHLQY 370
>At4g33430.1 68417.m04750 brassinosteroid insensitive 1-associated
receptor kinase 1 (BAK1) / somatic embryogenesis
receptor-like kinase 3 (SERK3) identical to SP|Q94F62
BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase
1 precursor (EC 2.7.1.37) (BRI1-associated receptor
kinase 1) (Somatic embryogenesis receptor-like kinase 3)
{Arabidopsis thaliana}; contains Pfam domains PF00560:
Leucine Rich Repeat and PF00069: Protein kinase domain;
identical to cDNA somatic embryogenesis receptor-like
kinase 3 (SERK3) GI:14573458
Length = 615
Score = 28.3 bits (60), Expect = 5.0
Identities = 29/95 (30%), Positives = 41/95 (43%), Gaps = 6/95 (6%)
Frame = +2
Query: 305 ERAEVTPPEDDPKQLFVAMTSDRGLCGAVHTGVSKVIRNRLGEPGAENIKV-----ICVG 469
ER E PP D PK+ +A+ S RGL +H I +R + A NI + VG
Sbjct: 377 ERPESQPPLDWPKRQRIALGSARGL-AYLHDHCDPKIIHR--DVKAANILLDEEFEAVVG 433
Query: 470 DKSRGILQRLYGKHI-ISVANEIGRLPPTFLDASQ 571
D L H+ +V IG + P +L +
Sbjct: 434 DFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGK 468
>At1g25220.1 68414.m03130 anthranilate synthase beta subunit (ASB1)
identical to anthranilate synthase beta subunit
GI:403434 from [Arabidopsis thaliana]
Length = 276
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = -1
Query: 453 LMFSAPGSPRRLRITLDTPVCTAPHKPLSEVIATNNCLGSSSGG 322
L+ PG+P+ I+L T + P PL V C+G + GG
Sbjct: 121 LISPGPGTPQDSGISLQTVLELGPLVPLFGVCMGLQCIGEAFGG 164
>At1g25155.1 68414.m03123 anthranilate synthase beta subunit,
putative strong similarity to anthranilate synthase beta
subunit GI:403434 from (Arabidopsis thaliana)
Length = 222
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = -1
Query: 453 LMFSAPGSPRRLRITLDTPVCTAPHKPLSEVIATNNCLGSSSGG 322
L+ PG+P+ I+L T + P PL V C+G + GG
Sbjct: 67 LISPGPGTPQDSGISLQTVLELGPLVPLFGVCMGLQCIGEAFGG 110
>At1g25083.1 68414.m03118 anthranilate synthase beta subunit,
putative strong similarity to anthranilate synthase beta
subunit GI:403434 from (Arabidopsis thaliana); similar
to ESTs dbj|AV540153.1, dbj|AV557490.1, gb|AI997696.1,
gb|AW004516.1, dbj|AV521371.1
Length = 222
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = -1
Query: 453 LMFSAPGSPRRLRITLDTPVCTAPHKPLSEVIATNNCLGSSSGG 322
L+ PG+P+ I+L T + P PL V C+G + GG
Sbjct: 67 LISPGPGTPQDSGISLQTVLELGPLVPLFGVCMGLQCIGEAFGG 110
>At1g24909.1 68414.m03112 anthranilate synthase beta subunit,
putative strong similarity to anthranilate synthase beta
subunit GI:403434 from (Arabidopsis thaliana)
Length = 222
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = -1
Query: 453 LMFSAPGSPRRLRITLDTPVCTAPHKPLSEVIATNNCLGSSSGG 322
L+ PG+P+ I+L T + P PL V C+G + GG
Sbjct: 67 LISPGPGTPQDSGISLQTVLELGPLVPLFGVCMGLQCIGEAFGG 110
>At1g24807.1 68414.m03108 anthranilate synthase beta subunit,
putative similar to anthranilate synthase beta chain
GI:403434; similar to ESTs dbj|AV540153.1,
dbj|AV557490.1, gb|AI997696.1, gb|AW004516.1,
dbj|AV521371.1
Length = 235
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = -1
Query: 453 LMFSAPGSPRRLRITLDTPVCTAPHKPLSEVIATNNCLGSSSGG 322
L+ PG+P+ I+L T + P PL V C+G + GG
Sbjct: 80 LISPGPGTPQDSGISLQTVLELGPLVPLFGVCMGLQCIGEAFGG 123
>At4g02350.1 68417.m00319 exocyst complex subunit Sec15-like family
protein contains Pfam profile PF04091: Exocyst complex
subunit Sec15-like
Length = 771
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = -3
Query: 475 FISHTDHLDVLSTRFAETVADHFGYTSVYSSAQTSVRGHSNKQLLG 338
F H HL + R AE HF T ++A+ ++ G K++ G
Sbjct: 536 FFRHAAHLSGVPLRMAERGRRHFPLTKSQNTAEDTLSGMLKKKIDG 581
>At3g60140.1 68416.m06715 glycosyl hydrolase family 1 protein
contains Pfam PF00232 : Glycosyl hydrolase family 1
domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
similar to Cyanogenic Beta-Glucosidase
(GI:1311386)(pdb:1CBG) [Trifolium Repens]; identical
beta-glucosidase GI:10834547
Length = 577
Score = 27.9 bits (59), Expect = 6.6
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -3
Query: 544 ETSDLISNTNDVLSVQSLQDTARFISHTDHLDVLSTRF 431
E S ++ N++D + + TARF +H H+D RF
Sbjct: 321 EQSKMLQNSSDFVGINYY--TARFAAHLPHIDPEKPRF 356
>At2g13790.1 68415.m01522 leucine-rich repeat family protein /
protein kinase family protein
Length = 620
Score = 27.9 bits (59), Expect = 6.6
Identities = 28/95 (29%), Positives = 41/95 (43%), Gaps = 6/95 (6%)
Frame = +2
Query: 305 ERAEVTPPEDDPKQLFVAMTSDRGLCGAVHTGVSKVIRNRLGEPGAENIKV-----ICVG 469
ER E P D PK+ +A+ S RGL +H + I +R + A NI + VG
Sbjct: 382 ERPEGNPALDWPKRKHIALGSARGL-AYLHDHCDQKIIHR--DVKAANILLDEEFEAVVG 438
Query: 470 DKSRGILQRLYGKHI-ISVANEIGRLPPTFLDASQ 571
D L H+ +V IG + P +L +
Sbjct: 439 DFGLAKLMNYNDSHVTTAVRGTIGHIAPEYLSTGK 473
>At5g09980.1 68418.m01153 expressed protein
Length = 81
Score = 27.5 bits (58), Expect = 8.8
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = +2
Query: 326 PEDDPKQLFVAMTSDRGLCGAVHTGVSKVIRNRLGEPGAENIK 454
PED +++ V S RGL G V K R G+PG N K
Sbjct: 39 PEDGEEEVKVVEVSSRGLPG--KKNVLKKSRESSGKPGGTNKK 79
>At4g21050.1 68417.m03044 Dof-type zinc finger domain-containing
protein PBF protein, Triticum aestivum, EMBL:AJ012284
Length = 210
Score = 27.5 bits (58), Expect = 8.8
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = -3
Query: 538 SDLISNTNDVLSVQSLQDTARFISHTDHLDVLSTRFAETVADHFGYTS 395
S+++S N ++ QS + T D S+ V +HFGY S
Sbjct: 87 SEMVSVENQPINHQSFRQTQENNEFVRSFDASSSATVTAVPNHFGYLS 134
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,403,516
Number of Sequences: 28952
Number of extensions: 365986
Number of successful extensions: 997
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 962
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 993
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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