Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0516
         (627 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    26   0.30 
AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    23   1.6  
AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory recept...    23   2.8  
AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory recept...    23   2.8  

>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 25.8 bits (54), Expect = 0.30
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = -3

Query: 250 LIMFSTCEQTVLTAASSFLD--PNHFSTFRRRGFTMRMSTAKCLKFLL 113
           L+MFS  +    T         PN ++ F  + +T +    KC+K+L+
Sbjct: 11  LLMFSYTDNVSSTRTKYLRTNFPNFYNDFEVQRYTWKCENQKCVKYLV 58


>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 450 NSLEDVSSSAALIQQSTTVKNKDIRKFLDGLY 545
           N+L    S+ AL+      K+  I++FL G+Y
Sbjct: 94  NTLNTCRSALALLLSPEVGKDHRIKRFLRGVY 125


>AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory receptor
           candidate 13 protein.
          Length = 390

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -2

Query: 554 LRYIKTIQELSDILILDCSRLLNESSRARDIFQRVA 447
           L Y+  +  L  ILIL C R+ +E  +  ++ +++A
Sbjct: 294 LDYVSCVVALI-ILILQCGRVRSEVVKILNVLKKIA 328


>AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory receptor
           candidate 12 protein.
          Length = 316

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -2

Query: 554 LRYIKTIQELSDILILDCSRLLNESSRARDIFQRVA 447
           L Y+  +  L  ILIL C R+ +E  +  ++ +++A
Sbjct: 220 LDYVSCVVALI-ILILQCGRVRSEVVKILNVLKKIA 254


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,156
Number of Sequences: 336
Number of extensions: 2881
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16083914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)