Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0516
         (627 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0029 - 176002-176137,176495-176646,177166-177577,178010-17...   227   7e-60
09_04_0566 - 18583624-18583710,18584445-18584567,18584682-18585044    225   3e-59
04_03_0165 - 12170813-12170831,12171324-12171625                       28   7.0  
03_06_0712 - 35683814-35684065,35685296-35685466                       27   9.2  

>02_01_0029 -
           176002-176137,176495-176646,177166-177577,178010-178126,
           178260-178322,178964-179167,180605-180687,182394-182516,
           182987-183328
          Length = 543

 Score =  227 bits (554), Expect = 7e-60
 Identities = 106/179 (59%), Positives = 139/179 (77%), Gaps = 3/179 (1%)
 Frame = +3

Query: 48  PNGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNP---RLLKVEKWFGSKKELAAVR 218
           P+G+TVHV +++VTV+GPRG L RNFKHL +D +++     R L+V+ WFG+++ +AA+R
Sbjct: 4   PSGVTVHVAAKVVTVEGPRGKLTRNFKHLNLDFQLLEVEGVRKLQVDAWFGTRRTMAAIR 63

Query: 219 TVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPG 398
           T  SHV+N+I GVTKG++YKMR VYAHFPIN   T  N+ IEIRNFLGEK +R+V M  G
Sbjct: 64  TAISHVQNLITGVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNFLGEKKVRKVDMLEG 123

Query: 399 VTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVLD 575
           VT++ S K KDEL+++GN +E VS SAALI Q   VKNKDIRKFLDG+YVS+K T+  D
Sbjct: 124 VTILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSDKGTITED 182


>09_04_0566 - 18583624-18583710,18584445-18584567,18584682-18585044
          Length = 190

 Score =  225 bits (549), Expect = 3e-59
 Identities = 105/177 (59%), Positives = 137/177 (77%), Gaps = 1/177 (0%)
 Frame = +3

Query: 48  PNGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNP-RLLKVEKWFGSKKELAAVRTV 224
           P G+TV V +++VTV+GPRG L RNFKHL +D +++   R L+V+ WFG+++ +AA+RT 
Sbjct: 13  PEGVTVQVAAKVVTVEGPRGKLTRNFKHLNLDFQLLEGGRKLQVDAWFGTRRTMAAIRTA 72

Query: 225 CSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVT 404
            SHV+N+I GVTKG++YKMR VYAHFPIN   T  N+ IEIRNFLGEK +R+V M  GVT
Sbjct: 73  ISHVQNLITGVTKGYRYKMRFVYAHFPINASITNSNTAIEIRNFLGEKKVRKVDMLEGVT 132

Query: 405 VVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVLD 575
           ++ S K KDEL+++GN +E VS SAALI Q   VKNKDIRKFLDG+YVS+K T+  D
Sbjct: 133 ILRSEKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSDKGTITED 189


>04_03_0165 - 12170813-12170831,12171324-12171625
          Length = 106

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 15/36 (41%), Positives = 18/36 (50%)
 Frame = -3

Query: 112 RTPRGPLTVTRRDFTWTVSPLGF*LYDLLQFASCLG 5
           RTPR P         W ++ LGF + D   F SCLG
Sbjct: 34  RTPRLPSAAATHAAAWLLANLGFGIGD---FGSCLG 66


>03_06_0712 - 35683814-35684065,35685296-35685466
          Length = 140

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 13/25 (52%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
 Frame = +3

Query: 108 VLKRNF-KHLAVDIRMVNPRLLKVE 179
           VLKR+F +  AVD+R +NP++ K E
Sbjct: 5   VLKRHFSRKRAVDVRRINPKVPKEE 29


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,861,616
Number of Sequences: 37544
Number of extensions: 320547
Number of successful extensions: 696
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 694
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)