Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0516
(627 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23) 158 3e-39
SB_40010| Best HMM Match : No HMM Matches (HMM E-Value=.) 58 4e-09
SB_12264| Best HMM Match : Filament (HMM E-Value=0.0075) 33 0.19
SB_41075| Best HMM Match : RVT_1 (HMM E-Value=2.1e-30) 31 1.0
SB_42363| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_49554| Best HMM Match : DNA_gyraseA_C (HMM E-Value=7) 29 2.3
SB_17599| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_23500| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_36341| Best HMM Match : DUF329 (HMM E-Value=1.7) 29 4.1
SB_7938| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_18512| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_22208| Best HMM Match : PAAR_motif (HMM E-Value=0.005) 28 7.1
SB_46518| Best HMM Match : VWA (HMM E-Value=1.6e-07) 28 7.1
SB_2838| Best HMM Match : DUF436 (HMM E-Value=3.5) 28 7.1
SB_29064| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
>SB_19540| Best HMM Match : Pro_isomerase (HMM E-Value=1.5e-23)
Length = 741
Score = 158 bits (384), Expect = 3e-39
Identities = 68/116 (58%), Positives = 91/116 (78%)
Frame = +3
Query: 48 PNGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVC 227
P+ + V VKSR+VTV GPRG LKRNF+HL +++ V ++V+ WF S+KELA V+T+
Sbjct: 569 PDNVEVKVKSRVVTVTGPRGTLKRNFRHLRLELTKVGKDKVRVDVWFASRKELACVKTII 628
Query: 228 SHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAP 395
+H+ENMIKGV G++YKMRAVYAHFPIN E +++E+RNFLGEKY+RRV+M P
Sbjct: 629 THIENMIKGVIYGYRYKMRAVYAHFPINIAIQENGTLVEVRNFLGEKYVRRVRMRP 684
>SB_40010| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 34
Score = 58.4 bits (135), Expect = 4e-09
Identities = 27/30 (90%), Positives = 29/30 (96%)
Frame = +3
Query: 480 ALIQQSTTVKNKDIRKFLDGLYVSEKTTVV 569
ALIQQST VKNKDIRKFLDG+YVSEKTT+V
Sbjct: 2 ALIQQSTKVKNKDIRKFLDGVYVSEKTTIV 31
>SB_12264| Best HMM Match : Filament (HMM E-Value=0.0075)
Length = 762
Score = 33.1 bits (72), Expect = 0.19
Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Frame = +3
Query: 327 GNSIIEIRNFLGEKYIRRVKMAPGVTVVNSPKQ--KDELIIEGNSLEDVSSSAALIQQST 500
G ++ +++ LG++ + T + K+EL +SLE+VS A +Q S
Sbjct: 196 GREVVRLKDELGKQASNELSFIAKTTELEDQLVLLKEELNSRVSSLENVSKQLAELQSSA 255
Query: 501 TVKNKDIRKFLDGLYVSEK 557
K+++I L V+EK
Sbjct: 256 LTKDEEISSLTKRLQVTEK 274
>SB_41075| Best HMM Match : RVT_1 (HMM E-Value=2.1e-30)
Length = 1152
Score = 30.7 bits (66), Expect = 1.0
Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Frame = +3
Query: 366 KYIRRVKMAPGVTVVNSPKQKDELIIE-GNSLEDVSSSAALIQQSTTVKNKDIRKFLDGL 542
K R ++A G+ ++P Q + LI G EDV S+ +L + + + KF DG
Sbjct: 25 KRFERFRIASGLDKKDAPSQINALIYTMGERAEDVLSTFSLTEAESKDYKVVVEKF-DGH 83
Query: 543 YVSEKTTV 566
+V ++ T+
Sbjct: 84 FVKKRNTI 91
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +3
Query: 69 VKSRLVTVKGPRGVLKRNFKHL 134
V++R TV PRG L+RN +HL
Sbjct: 1069 VETRSYTVSTPRGELRRNRRHL 1090
>SB_42363| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 218
Score = 29.9 bits (64), Expect = 1.8
Identities = 18/46 (39%), Positives = 26/46 (56%)
Frame = -2
Query: 173 LQETRVYHANVNSQVFEVPFENSAGPFNCHQTRFHMDRKPVGILTL 36
L TR+ + V+S EV E S P++CHQ D+ P+ I+TL
Sbjct: 160 LYNTRIPNVTVSSDGGEVELEISDDPYDCHQ--LPPDQMPI-IITL 202
>SB_49554| Best HMM Match : DNA_gyraseA_C (HMM E-Value=7)
Length = 535
Score = 29.5 bits (63), Expect = 2.3
Identities = 30/134 (22%), Positives = 52/134 (38%)
Frame = +3
Query: 159 PRLLKVEKWFGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSI 338
P K W K A+ +E I TK Q K +Y N E ++
Sbjct: 215 PGFRKKSSWCPEKGREIAIEAYAKALEEKILSSTK--QGK---IYR----NLTQDERRAL 265
Query: 339 IEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKD 518
++R + + I+ GV V++ K E + + + E + L Q T + N+
Sbjct: 266 KDLR-YAKDIVIKEADKGSGVVVMDKDKYNQEALRQLSDKEVYKETKDLTQYITELVNRR 324
Query: 519 IRKFLDGLYVSEKT 560
+RK ++ +KT
Sbjct: 325 VRKLSSDGFIDDKT 338
>SB_17599| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 803
Score = 29.1 bits (62), Expect = 3.1
Identities = 30/134 (22%), Positives = 54/134 (40%)
Frame = +3
Query: 159 PRLLKVEKWFGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSI 338
P K W K A+ +E I TK Q K +Y+ N E ++
Sbjct: 444 PAFRKKSSWCPEKGREIAIEAYAKALEEEILSSTK--QGK---IYS----NLTQDERRAL 494
Query: 339 IEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKD 518
++R + + I+ GV V++ K E++ + + E + L Q T + N+
Sbjct: 495 KDLR-YAKDIVIKEADKGSGVVVMDKDKYIQEVLRQLSDKEVYKETKDLTQYITELVNRR 553
Query: 519 IRKFLDGLYVSEKT 560
+RK ++ +KT
Sbjct: 554 VRKLSADGFIDDKT 567
Score = 27.9 bits (59), Expect = 7.1
Identities = 28/134 (20%), Positives = 50/134 (37%)
Frame = +3
Query: 159 PRLLKVEKWFGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSI 338
P K W K A+ +E I TK +Y N E ++
Sbjct: 205 PAFRKKSSWCPEKGREIAIEAYAKALEEEILSSTK-----QGTIYG----NLTQDERRAL 255
Query: 339 IEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKD 518
++R + + I+ GV V++ K E + + + E + L Q T + N+
Sbjct: 256 KDLR-YAKDIVIKEADKGSGVVVMDKDKYIQEALRQLSDKEVYKETKDLTQYITELVNRR 314
Query: 519 IRKFLDGLYVSEKT 560
+RK ++ +KT
Sbjct: 315 VRKLSADGFIDDKT 328
>SB_23500| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 586
Score = 29.1 bits (62), Expect = 3.1
Identities = 30/134 (22%), Positives = 53/134 (39%)
Frame = +3
Query: 159 PRLLKVEKWFGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSI 338
P K W K A+ +E I TK Q K +Y+ N E ++
Sbjct: 123 PAFRKKSSWCPEKSREIAIEAYAKALEEEILSSTK--QGK---IYS----NLTQDERQAL 173
Query: 339 IEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKD 518
++R + + I+ GV V++ K E + + + E + L Q T + N+
Sbjct: 174 KDLR-YTKDIVIKEADKGSGVVVMDKDKYIQEALRQLSDKEVYKETKDLTQYITELVNRR 232
Query: 519 IRKFLDGLYVSEKT 560
+RK ++ +KT
Sbjct: 233 VRKLSADGFIDDKT 246
>SB_36341| Best HMM Match : DUF329 (HMM E-Value=1.7)
Length = 197
Score = 28.7 bits (61), Expect = 4.1
Identities = 19/48 (39%), Positives = 22/48 (45%), Gaps = 7/48 (14%)
Frame = -2
Query: 164 TRVYHANVNSQVFEVP-------FENSAGPFNCHQTRFHMDRKPVGIL 42
TR YH NV VF V F S G N HQ + DR+P +L
Sbjct: 57 TRSYHENVVRPVFGVSDYWYRYEFAKSRGQINRHQLSWREDRQPHELL 104
>SB_7938| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 203
Score = 28.7 bits (61), Expect = 4.1
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = -3
Query: 226 QTVLTAASSFLDPNHFSTFRRRGFTMRMSTAKCLKFLLRTPRGPLTVT 83
QT++T A F D RRR F+ +S C + L R+P P++ T
Sbjct: 85 QTMITTA--FPDTRKSPLTRRRNFSDGVSDLSCTENLARSPCAPVSPT 130
>SB_18512| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 551
Score = 28.3 bits (60), Expect = 5.4
Identities = 30/134 (22%), Positives = 53/134 (39%)
Frame = +3
Query: 159 PRLLKVEKWFGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSI 338
P K W K A+ +E I TK Q K +Y+ N E ++
Sbjct: 57 PAFRKKSSWCPEKGREIAIEAYAKALEEEILSSTK--QGK---IYS----NLTQDERRAL 107
Query: 339 IEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKD 518
++R + + I+ GV V++ K E + + + E + L Q T + N+
Sbjct: 108 KDLR-YAKDIVIKEADKGSGVVVMDKDKYIQEALRQLSDKEVYKETKDLTQYITELVNRR 166
Query: 519 IRKFLDGLYVSEKT 560
+RK ++ +KT
Sbjct: 167 VRKLSADGFIDDKT 180
>SB_22208| Best HMM Match : PAAR_motif (HMM E-Value=0.005)
Length = 316
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Frame = +3
Query: 429 DELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEKT-TVVLDD 578
D ++EG+ + V S AA++++ V N +DG V+ +++LDD
Sbjct: 169 DAAVVEGDKVVVVDSDAAVVERDKVVVNDSDAAVVDGDEVAVVAWSLILDD 219
>SB_46518| Best HMM Match : VWA (HMM E-Value=1.6e-07)
Length = 309
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = -3
Query: 451 LPSMISSSFCFGELTTVTPGAIFTLLMYFSPKKLRISIIE 332
+P I S G+L +T G I T PKKL +IE
Sbjct: 218 IPIAIGSKVNLGQLNILTAGPIITANTSGDPKKLANQVIE 257
>SB_2838| Best HMM Match : DUF436 (HMM E-Value=3.5)
Length = 422
Score = 27.9 bits (59), Expect = 7.1
Identities = 30/134 (22%), Positives = 53/134 (39%)
Frame = +3
Query: 159 PRLLKVEKWFGSKKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSI 338
P K W K A+ +E I TK Q K +Y+ N E ++
Sbjct: 107 PAFRKKSSWCPEKGREIAIEAYAKALEEEILSSTK--QGK---IYS----NLTQDERRAL 157
Query: 339 IEIRNFLGEKYIRRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKD 518
++R + + I+ GV V++ K E + + + E + L Q T + N+
Sbjct: 158 KDLR-YAKDIVIKEADKGSGVVVMDKGKYIQEALRQLSDKEVYKETKDLTQYITELVNRR 216
Query: 519 IRKFLDGLYVSEKT 560
+RK ++ +KT
Sbjct: 217 VRKLSADGFIDDKT 230
>SB_29064| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 324
Score = 27.5 bits (58), Expect = 9.4
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = -3
Query: 481 AAELETSSKELPSMISSSFCFGELTTVTPGAIFTLLMYFSPKKLRISIIEL 329
AAE++TS L + S S C VT IFT MY P+++ ++ L
Sbjct: 234 AAEVKTSRIFLLVINSFSICLAPFMIVTFIEIFTGTMYTVPRQVYLATTNL 284
>SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2834
Score = 27.5 bits (58), Expect = 9.4
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 5/90 (5%)
Frame = +3
Query: 195 KKELAAVRTVCSHVENMIKGVTKGFQY-KMRAVYAHFPI--NCVTTEGNSIIE-IRNFLG 362
K+ LAA + V + N+ KGVT+G K R V PI V T+G + + + G
Sbjct: 948 KRALAAAKVVKTERVNVAKGVTQGMPVTKGRVVTQGMPITPGRVVTQGKVVTQGMPVTPG 1007
Query: 363 EKYIRRVKMAPGVTVVNS-PKQKDELIIEG 449
+ + + PG V P + ++ +G
Sbjct: 1008 RVVTQGIPVTPGRIVTQGIPVTQGRVVTQG 1037
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,761,113
Number of Sequences: 59808
Number of extensions: 390066
Number of successful extensions: 928
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 890
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 927
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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