Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0516
         (627 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    25   2.0  
M93690-2|AAA29363.1| 1212|Anopheles gambiae unknown protein.           25   2.6  
DQ974164-1|ABJ52804.1|  410|Anopheles gambiae serpin 4C protein.       23   7.9  
AF487537-1|AAL93298.1|  507|Anopheles gambiae cytochrome P450 CY...    23   7.9  

>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 25.0 bits (52), Expect = 2.0
 Identities = 19/98 (19%), Positives = 40/98 (40%)
 Frame = +3

Query: 195  KKELAAVRTVCSHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYI 374
            + EL    T    +  M++ + K     +  +  H  +  V  +  +I++IRN+LG+  +
Sbjct: 947  RDELIRYSTALRDLTQMMRDIRKSRFSHLHKLTTHMALR-VKHKFTNIMQIRNYLGKLRV 1005

Query: 375  RRVKMAPGVTVVNSPKQKDELIIEGNSLEDVSSSAALI 488
             + +    ++VV         +    SL     S A +
Sbjct: 1006 NQEECRLSLSVVPRDANVQNAVSTTKSLSGGERSYATV 1043


>M93690-2|AAA29363.1| 1212|Anopheles gambiae unknown protein.
          Length = 1212

 Score = 24.6 bits (51), Expect = 2.6
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -3

Query: 244 MFSTCEQTVLTAASSFLDPN 185
           M S CE+T+    SSF DP+
Sbjct: 327 MISACEKTMQRMTSSFPDPH 346


>DQ974164-1|ABJ52804.1|  410|Anopheles gambiae serpin 4C protein.
          Length = 410

 Score = 23.0 bits (47), Expect = 7.9
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +1

Query: 340 LRYVTSWVRNTSEG 381
           +RY+ SWV N + G
Sbjct: 84  VRYINSWVHNQTHG 97


>AF487537-1|AAL93298.1|  507|Anopheles gambiae cytochrome P450
           CYP6P2 protein.
          Length = 507

 Score = 23.0 bits (47), Expect = 7.9
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -2

Query: 149 ANVNSQVFEVPFENSAGPFNCHQTRFHMDRKPVGILTL 36
           AN       +PF    GP  C   RF M +  VG++TL
Sbjct: 434 ANARPAYVYMPF--GEGPRICIGLRFGMMQTKVGLITL 469


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 624,372
Number of Sequences: 2352
Number of extensions: 12975
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 61050630
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)