Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0516
(627 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006679-6|AAK84469.1| 189|Caenorhabditis elegans Ribosomal pro... 235 2e-62
AC006633-1|AAK68374.1| 113|Caenorhabditis elegans Hypothetical ... 33 0.13
U10401-7|AAA19056.1| 504|Caenorhabditis elegans Hypothetical pr... 31 0.67
AC024791-30|AAL32250.2| 2460|Caenorhabditis elegans Hypothetical... 31 0.67
AL132860-13|CAB60509.1| 292|Caenorhabditis elegans Hypothetical... 28 4.8
AF003151-1|AAK18921.2| 1184|Caenorhabditis elegans Hypothetical ... 28 6.3
Z68317-2|CAA92690.2| 980|Caenorhabditis elegans Hypothetical pr... 27 8.3
Z49968-5|CAE47470.1| 1155|Caenorhabditis elegans Hypothetical pr... 27 8.3
Z49968-4|CAA90261.1| 1156|Caenorhabditis elegans Hypothetical pr... 27 8.3
>AC006679-6|AAK84469.1| 189|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 9 protein.
Length = 189
Score = 235 bits (574), Expect = 2e-62
Identities = 106/177 (59%), Positives = 137/177 (77%)
Frame = +3
Query: 48 PNGLTVHVKSRLVTVKGPRGVLKRNFKHLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVC 227
P G+T VK+R+V V GPRG ++++F+HL +++ + L+V KWFG +KELAA+RTVC
Sbjct: 13 PEGVTFTVKNRIVHVTGPRGTIRKDFRHLHMEMERIGKSTLRVRKWFGVRKELAAIRTVC 72
Query: 228 SHVENMIKGVTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMAPGVTV 407
SH++NMIKGVT GF+YKMR+VYAHFPIN +GN +EIRNFLGEK +RRV + GV
Sbjct: 73 SHIKNMIKGVTVGFRYKMRSVYAHFPINVTLQDGNRTVEIRNFLGEKIVRRVPLPEGVIA 132
Query: 408 VNSPKQKDELIIEGNSLEDVSSSAALIQQSTTVKNKDIRKFLDGLYVSEKTTVVLDD 578
S QKDE+++EGN ++ VS +AA IQQST VK KDIRKFLDG+YVSEKTT+V D
Sbjct: 133 TISTAQKDEIVVEGNDVQFVSQAAARIQQSTAVKEKDIRKFLDGIYVSEKTTIVPTD 189
>AC006633-1|AAK68374.1| 113|Caenorhabditis elegans Hypothetical
protein F35B3.3 protein.
Length = 113
Score = 33.5 bits (73), Expect = 0.13
Identities = 17/39 (43%), Positives = 26/39 (66%)
Frame = -2
Query: 569 HNSCFLRYIKTIQELSDILILDCSRLLNESSRARDIFQR 453
+N+C LR IK + L+ +L + SRL N SR RD+F++
Sbjct: 25 NNNCKLRQIKPVPNLTRLL--EESRLTNSLSRLRDVFKK 61
>U10401-7|AAA19056.1| 504|Caenorhabditis elegans Hypothetical
protein T20B12.3 protein.
Length = 504
Score = 31.1 bits (67), Expect = 0.67
Identities = 14/46 (30%), Positives = 25/46 (54%)
Frame = -3
Query: 262 LVTPLIMFSTCEQTVLTAASSFLDPNHFSTFRRRGFTMRMSTAKCL 125
L P +++ + ++++LT SFL H T+ F R+S +CL
Sbjct: 275 LTNPSLLYMSQKESILTLLDSFLSSTHLPTYITASFLKRLS--RCL 318
>AC024791-30|AAL32250.2| 2460|Caenorhabditis elegans Hypothetical
protein Y47G6A.29 protein.
Length = 2460
Score = 31.1 bits (67), Expect = 0.67
Identities = 17/63 (26%), Positives = 36/63 (57%), Gaps = 5/63 (7%)
Frame = +3
Query: 129 HLAVDIRMVNPRLLKVEKWFGSKKELAAVRTVC---SHVENMIKGVT--KGFQYKMRAVY 293
H+ D++++ + ++ WF ++L ++RT C S ++ I +T KGF + M+A +
Sbjct: 361 HVKHDVKIILTKETCMDIWFMRGEQLESIRTRCGPLSSLDMSILWITTEKGFYWNMKAEF 420
Query: 294 AHF 302
+F
Sbjct: 421 LNF 423
>AL132860-13|CAB60509.1| 292|Caenorhabditis elegans Hypothetical
protein Y56A3A.15 protein.
Length = 292
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -2
Query: 578 VI*HNSCFLRYIKTIQELSDILILDCSRLLNESSRARD 465
++ HN +L + KT L DIL+ +CS+ E + D
Sbjct: 180 ILTHNFYWLEFFKTKVTLDDILVSNCSKFSIEYNNLPD 217
>AF003151-1|AAK18921.2| 1184|Caenorhabditis elegans Hypothetical
protein D1007.15 protein.
Length = 1184
Score = 27.9 bits (59), Expect = 6.3
Identities = 11/46 (23%), Positives = 25/46 (54%)
Frame = +3
Query: 255 VTKGFQYKMRAVYAHFPINCVTTEGNSIIEIRNFLGEKYIRRVKMA 392
++ F Y + +++ FPI C+ + I+ + +G Y+R V ++
Sbjct: 1085 LSSSFVYGLSSLWYEFPIKCLLWDAAVIVCLITQIGYSYLRGVHLS 1130
>Z68317-2|CAA92690.2| 980|Caenorhabditis elegans Hypothetical
protein T01H3.2 protein.
Length = 980
Score = 27.5 bits (58), Expect = 8.3
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -2
Query: 395 RCHLYPSDVFLTQEVTYLNN*ITLSGD-TVNGEVSIHSTHLVLEAF 261
RC L ++F + +T LNN + + GD +++ + S VL F
Sbjct: 477 RCQLMQGELFRSVNITILNNNLQIYGDNSLSKSIDTSSIKSVLPCF 522
>Z49968-5|CAE47470.1| 1155|Caenorhabditis elegans Hypothetical
protein M110.4b protein.
Length = 1155
Score = 27.5 bits (58), Expect = 8.3
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -2
Query: 140 NSQVFEVPFENSAGPFNCHQTRFHMDR 60
+SQ F +PF N++GP N + R M++
Sbjct: 26 SSQQFVMPFVNTSGPVNSNYQRMPMNQ 52
>Z49968-4|CAA90261.1| 1156|Caenorhabditis elegans Hypothetical
protein M110.4a protein.
Length = 1156
Score = 27.5 bits (58), Expect = 8.3
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = -2
Query: 140 NSQVFEVPFENSAGPFNCHQTRFHMDR 60
+SQ F +PF N++GP N + R M++
Sbjct: 26 SSQQFVMPFVNTSGPVNSNYQRMPMNQ 52
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,852,931
Number of Sequences: 27780
Number of extensions: 289444
Number of successful extensions: 681
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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